Variant report

Variant	rs12064476
Chromosome Location	chr1:223559551-223559552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223557682..223561611-chr1:223564803..223568254,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178395	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10907375	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11261265	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11261268	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11261269	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11579995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12074609	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12074782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12078619	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12082133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12087387	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12094897	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12405882	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1400964	0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1621030	0.85[ASN][1000 genomes]
rs1713213	0.89[CHB][hapmap]
rs17162005	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17163836	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1914612	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2298063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2353204	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2501982	0.93[EUR][1000 genomes]
rs2678369	0.90[CHB][hapmap]
rs2678370	0.81[CHB][hapmap]
rs28788929	0.93[ASN][1000 genomes]
rs28897212	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34482638	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35059272	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35345617	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35727959	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35736338	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35996176	0.90[CHB][hapmap];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59584296	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61838203	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61838204	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61838211	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61838232	0.84[ASN][1000 genomes]
rs61838233	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61838244	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61838245	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6661314	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6677044	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6679661	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6682552	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6689850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6700523	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6701453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs825143	0.81[CHB][hapmap]
rs825148	0.90[CHB][hapmap]
rs862216	0.81[ASN][1000 genomes]
rs866637	0.90[CHB][hapmap]

No data

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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