Variant report

Variant	rs10907375
Chromosome Location	chr1:223546863-223546864
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223536038..223539069-chr1:223546089..223550790,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143502	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11261265	0.81[AFR][1000 genomes]
rs11261268	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11261269	0.88[ASN][1000 genomes]
rs11579995	0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12064476	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12074609	0.81[ASN][1000 genomes]
rs12074782	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12078619	0.87[ASN][1000 genomes]
rs12082133	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12087387	0.86[ASN][1000 genomes]
rs12094897	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12405882	0.88[ASN][1000 genomes]
rs1400964	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547789	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1621030	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17162005	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17163834	0.94[EUR][1000 genomes]
rs17163836	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914612	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2282399	0.94[EUR][1000 genomes]
rs2298063	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2353204	0.88[ASN][1000 genomes]
rs2678369	0.80[CHB][hapmap]
rs28788929	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28897212	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34482638	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35059272	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35345617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35727959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35736338	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35996176	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs41460051	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4661241	0.94[EUR][1000 genomes]
rs59584296	0.88[ASN][1000 genomes]
rs61838203	0.87[ASN][1000 genomes]
rs61838204	0.87[ASN][1000 genomes]
rs61838211	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61838232	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61838233	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61838244	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61838245	0.92[ASN][1000 genomes]
rs6604707	0.94[EUR][1000 genomes]
rs6661314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6677044	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6679661	0.90[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6682552	0.80[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6689850	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6700523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701453	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs825148	0.80[CHB][hapmap]
rs862216	0.87[ASN][1000 genomes]
rs866637	0.80[CHB][hapmap]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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