Variant report

Variant	rs34075727
Chromosome Location	chr14:69492926-69492927
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11628353	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12432046	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12586650	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12587583	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12889047	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12894822	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17758220	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34227963	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34471700	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35286356	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35700516	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36114431	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7150412	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7151437	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69473000-69503600	Weak transcription	Right Atrium	heart
2	chr14:69486000-69503600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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