Variant report

Variant	rs17758220
Chromosome Location	chr14:69502070-69502071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69492929..69495607-chr14:69501759..69504340,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10083451	0.81[CHB][hapmap]
rs10130013	0.81[CHB][hapmap]
rs10139873	0.81[CHB][hapmap]
rs10143302	0.81[CHB][hapmap]
rs10145565	0.81[CHB][hapmap]
rs10146339	0.83[CHB][hapmap]
rs10147369	0.81[CHB][hapmap]
rs10148614	0.90[CHB][hapmap]
rs10149232	0.83[CHB][hapmap]
rs11158782	0.81[CHB][hapmap]
rs11158787	0.81[CHB][hapmap]
rs11158790	0.81[CHB][hapmap]
rs1147481	0.82[CHB][hapmap]
rs11622889	0.81[CHB][hapmap]
rs11628126	0.81[CHB][hapmap]
rs11628353	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12431846	0.81[CHB][hapmap]
rs12432046	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12432645	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[AFR][1000 genomes]
rs12434775	0.81[CHB][hapmap]
rs12435594	0.81[CHB][hapmap]
rs12586650	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12587583	0.90[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12589028	0.81[CHB][hapmap]
rs1275407	0.81[CHB][hapmap]
rs1275415	0.81[CHB][hapmap]
rs12889047	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12894822	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1892297	0.83[CHB][hapmap]
rs1914004	0.83[CHB][hapmap]
rs2001998	0.81[CHB][hapmap]
rs2056153	0.81[CHB][hapmap]
rs28613298	0.81[CHB][hapmap]
rs34075727	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34227963	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34471700	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35286356	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35700516	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36114431	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6573869	0.82[CHB][hapmap]
rs7150412	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7151437	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7157918	0.82[CHB][hapmap];1.00[AFR][1000 genomes]
rs7160629	0.83[CHB][hapmap]
rs8008184	0.81[CHB][hapmap]
rs9323524	0.81[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17758220	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69473000-69503600	Weak transcription	Right Atrium	heart
2	chr14:69486000-69503600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:69500800-69502400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:69501000-69502200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr14:69501000-69502400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:69501000-69502600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:69501000-69503000	Enhancers	HUVEC	blood vessel
8	chr14:69501000-69506600	Enhancers	Osteobl	bone
9	chr14:69501200-69502200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr14:69501200-69502200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:69501200-69502400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr14:69501200-69502400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:69501200-69502600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr14:69501200-69502600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr14:69501200-69502600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:69501200-69502600	Enhancers	NH-A	brain
17	chr14:69501400-69502200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr14:69501400-69502200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr14:69501400-69502400	Weak transcription	Aorta	Aorta
20	chr14:69501400-69505000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr14:69501400-69505200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:69501600-69502200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:69501600-69502400	Enhancers	HSMM	muscle
24	chr14:69501600-69502600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr14:69501600-69506200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr14:69501800-69502200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr14:69501800-69502600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr14:69501800-69502600	Enhancers	Fetal Kidney	kidney
29	chr14:69501800-69503800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr14:69501800-69504400	Weak transcription	NHLF	lung
31	chr14:69501800-69506000	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr14:69502000-69502200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr14:69502000-69503400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr14:69502000-69503600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr14:69502000-69503600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr14:69502000-69503600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr14:69502000-69503600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr14:69502000-69503800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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