Variant report

Variant	rs35286356
Chromosome Location	chr14:69507688-69507689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11628353	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12432046	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12432645	1.00[AFR][1000 genomes]
rs12586650	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12587583	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12889047	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12894822	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17758220	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34075727	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34227963	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34471700	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35700516	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36114431	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7150412	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7151437	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7157918	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35286356	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69502200-69508600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:69502600-69508000	Weak transcription	Fetal Kidney	kidney
3	chr14:69504000-69508400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:69504800-69508400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:69504800-69508600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:69504800-69509600	Weak transcription	Pancreas	Pancrea
7	chr14:69505000-69508600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:69505200-69509600	Weak transcription	Spleen	Spleen
9	chr14:69505400-69510000	Weak transcription	Fetal Heart	heart
10	chr14:69505400-69510200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:69505800-69508800	Weak transcription	Ovary	ovary
12	chr14:69505800-69509200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:69505800-69509200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr14:69505800-69509600	Weak transcription	Esophagus	oesophagus
15	chr14:69505800-69509600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr14:69505800-69509800	Weak transcription	Placenta	Placenta
17	chr14:69505800-69509800	Weak transcription	Left Ventricle	heart
18	chr14:69505800-69509800	Weak transcription	Right Atrium	heart
19	chr14:69505800-69510600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr14:69505800-69510800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr14:69506000-69508600	Weak transcription	Brain Angular Gyrus	brain
22	chr14:69506000-69508800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr14:69506000-69508800	Weak transcription	Brain Anterior Caudate	brain
24	chr14:69506000-69509400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr14:69506000-69509400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr14:69506000-69511200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr14:69506200-69508600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr14:69506200-69508600	Weak transcription	Adipose Nuclei	Adipose
29	chr14:69506200-69509600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr14:69506200-69510000	Weak transcription	Right Ventricle	heart
31	chr14:69506400-69508400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr14:69506400-69508800	Weak transcription	NHDF-Ad	bronchial
33	chr14:69506400-69509200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr14:69506400-69509400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr14:69506400-69509600	Weak transcription	Psoas Muscle	Psoas
36	chr14:69506400-69509800	Weak transcription	NHLF	lung
37	chr14:69506400-69510200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr14:69506400-69510400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr14:69506600-69508000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr14:69506600-69508000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr14:69506600-69508600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr14:69506600-69508600	Weak transcription	HSMMtube	muscle
43	chr14:69506600-69508800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr14:69506600-69508800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr14:69506600-69508800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr14:69506600-69509200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:69506600-69509400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr14:69506600-69509400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr14:69506600-69509400	Weak transcription	Osteobl	bone
50	chr14:69506600-69509600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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