Variant report

Variant	rs3408
Chromosome Location	chr8:2093137-2093138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:2088536..2090295-chr8:2090683..2094194,3	K562	blood:
2	chr8:2092603..2094179-chr8:2096997..2098830,2	K562	blood:
3	chr8:2083371..2086382-chr8:2092735..2096107,4	K562	blood:

Variant related genes	Relation type
ENSG00000036448	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11136474	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12156403	1.00[CEU][hapmap]
rs17684901	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17752131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17752418	0.91[EUR][1000 genomes]
rs28399341	1.00[EUR][1000 genomes]
rs34025654	0.91[EUR][1000 genomes]
rs35244895	0.91[EUR][1000 genomes]
rs3824178	0.96[EUR][1000 genomes]
rs61733951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62479965	0.96[EUR][1000 genomes]
rs62480006	0.96[EUR][1000 genomes]
rs7832635	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2076000-2093400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:2076000-2094400	Weak transcription	Brain Hippocampus Middle	brain
3	chr8:2076000-2109600	Weak transcription	Right Atrium	heart
4	chr8:2076400-2097800	Strong transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:2076600-2096800	Strong transcription	Skeletal Muscle Male	skeletal muscle
6	chr8:2079400-2094600	Weak transcription	Fetal Heart	heart
7	chr8:2079400-2095800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr8:2079600-2093600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:2079800-2093400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr8:2080800-2096800	Strong transcription	Left Ventricle	heart
11	chr8:2082400-2093200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr8:2085400-2094600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr8:2086200-2096800	Weak transcription	Spleen	Spleen
14	chr8:2086400-2094200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr8:2087200-2095400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr8:2087400-2095400	Enhancers	Primary T cells from cord blood	blood
17	chr8:2088000-2094200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr8:2089400-2095400	Weak transcription	Ovary	ovary
19	chr8:2090200-2096400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr8:2090200-2096600	Weak transcription	Psoas Muscle	Psoas
21	chr8:2090400-2093400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr8:2090400-2095000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr8:2090400-2096400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr8:2091000-2094000	Strong transcription	Right Ventricle	heart
25	chr8:2091000-2095400	Enhancers	Fetal Thymus	thymus
26	chr8:2091000-2095600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr8:2091200-2093200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr8:2091800-2094000	Weak transcription	Fetal Intestine Small	intestine
29	chr8:2092400-2093600	Enhancers	HSMMtube	muscle
30	chr8:2092400-2093800	Enhancers	Fetal Brain Female	brain
31	chr8:2092400-2095400	Enhancers	Fetal Brain Male	brain
32	chr8:2092600-2093200	Enhancers	Primary T cells fromperipheralblood	blood
33	chr8:2092600-2093200	Strong transcription	Fetal Stomach	stomach
34	chr8:2092600-2093400	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr8:2092600-2093600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr8:2092600-2093600	Genic enhancers	Fetal Muscle Leg	muscle
37	chr8:2092600-2093800	ZNF genes & repeats	Liver	Liver
38	chr8:2092800-2093600	Enhancers	Thymus	Thymus
39	chr8:2092800-2093800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
40	chr8:2092800-2094000	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr8:2092800-2095000	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr8:2093000-2093200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr8:2093000-2093200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr8:2093000-2093400	Weak transcription	Esophagus	oesophagus
45	chr8:2093000-2093800	Enhancers	Brain Substantia Nigra	brain
46	chr8:2093000-2094600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr8:2093000-2095400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr8:2093000-2096600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr8:2093000-2103400	Weak transcription	Pancreas	Pancrea
50	chr8:2093000-2107200	Weak transcription	Gastric	stomach

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