Variant report

Variant	rs34117302
Chromosome Location	chr5:70737746-70737747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10942466	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10942683	0.87[EUR][1000 genomes]
rs11740849	0.82[ASN][1000 genomes]
rs11744961	0.84[ASN][1000 genomes]
rs12109984	0.83[ASN][1000 genomes]
rs12110291	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12514575	0.83[ASN][1000 genomes]
rs12653037	0.87[ASN][1000 genomes]
rs12658383	0.83[ASN][1000 genomes]
rs13153636	0.83[ASN][1000 genomes]
rs13158264	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13165848	0.83[ASN][1000 genomes]
rs13168805	0.83[ASN][1000 genomes]
rs13185743	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1423358	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs149114	0.85[EUR][1000 genomes]
rs1698063	0.88[EUR][1000 genomes]
rs182190	0.88[EUR][1000 genomes]
rs2059192	0.83[ASN][1000 genomes]
rs2059193	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2059194	0.80[ASN][1000 genomes]
rs2315534	0.80[ASN][1000 genomes]
rs2646639	0.86[EUR][1000 genomes]
rs276592	0.87[EUR][1000 genomes]
rs276597	0.86[EUR][1000 genomes]
rs276598	0.86[EUR][1000 genomes]
rs276600	0.86[EUR][1000 genomes]
rs276601	0.87[EUR][1000 genomes]
rs279291	0.88[EUR][1000 genomes]
rs279322	0.87[EUR][1000 genomes]
rs34029702	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35327154	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36036841	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3761965	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs384732	0.87[EUR][1000 genomes]
rs3890749	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs392791	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs418738	0.88[EUR][1000 genomes]
rs4421086	0.97[ASN][1000 genomes]
rs4512120	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs467901	0.87[EUR][1000 genomes]
rs4703986	0.83[ASN][1000 genomes]
rs56399551	0.87[ASN][1000 genomes]
rs6881126	0.91[ASN][1000 genomes]
rs71624243	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7442961	0.83[ASN][1000 genomes]
rs7443763	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7447545	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7448221	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7448990	0.83[ASN][1000 genomes]
rs7732361	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs986217	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034703	chr5:70391173-70995695	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1850052	chr5:70674583-70745387	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv528571	chr5:70679626-70767269	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv964892	chr5:70703111-70745996	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34117302	BDP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:70736200-70738400	Enhancers	Liver	Liver
2	chr5:70736800-70737800	Enhancers	Primary neutrophils fromperipheralblood	blood

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