Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10942466	0.85[ASN][1000 genomes]
rs11744961	0.81[ASN][1000 genomes]
rs12109984	0.80[ASN][1000 genomes]
rs12110291	0.85[ASN][1000 genomes]
rs12514575	0.80[ASN][1000 genomes]
rs12653037	0.88[ASN][1000 genomes]
rs12658383	0.80[ASN][1000 genomes]
rs13153636	0.80[ASN][1000 genomes]
rs13158264	0.85[ASN][1000 genomes]
rs13165848	0.80[ASN][1000 genomes]
rs13168805	0.80[ASN][1000 genomes]
rs13185743	0.85[ASN][1000 genomes]
rs1423358	0.86[ASN][1000 genomes]
rs2059192	0.80[ASN][1000 genomes]
rs2059193	0.81[ASN][1000 genomes]
rs34029702	0.86[ASN][1000 genomes]
rs34117302	0.97[ASN][1000 genomes]
rs35327154	0.81[ASN][1000 genomes]
rs36036841	0.81[ASN][1000 genomes]
rs3890749	0.81[ASN][1000 genomes]
rs4512120	0.95[ASN][1000 genomes]
rs4703986	0.80[ASN][1000 genomes]
rs56399551	0.88[ASN][1000 genomes]
rs6881126	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71624243	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7442961	0.80[ASN][1000 genomes]
rs7443763	0.85[ASN][1000 genomes]
rs7447545	0.86[ASN][1000 genomes]
rs7448990	0.80[ASN][1000 genomes]
rs7732361	0.86[ASN][1000 genomes]
rs986217	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034703	chr5:70391173-70995695	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1850052	chr5:70674583-70745387	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv528571	chr5:70679626-70767269	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv964892	chr5:70703111-70745996	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4421086	BDP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:70715600-70718000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr5:70715800-70718000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr5:70715800-70718200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr5:70716000-70718400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:70716400-70718000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:70716400-70718400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:70716400-70718400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:70716800-70718000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:70717000-70718200	Enhancers	H9 Cell Line	embryonic stem cell
10	chr5:70717200-70718200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:70717400-70718000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:70717600-70718600	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search: