The 2.0 version of rSNPBase

Variant report

Variant rs34149515
Chromosome Location chr3:16953337-16953338
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:16940800-16954200 Weak transcription Brain Cingulate Gyrus brain
2 chr3:16940800-16962200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr3:16941800-16959400 Enhancers Primary B cells from peripheral blood blood
4 chr3:16943800-16954200 Weak transcription Brain Hippocampus Middle brain
5 chr3:16946200-16959000 Weak transcription Aorta Aorta
6 chr3:16949000-16965400 Enhancers Primary T helper cells PMA-I stimulated --
7 chr3:16949200-16953400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr3:16949200-16953800 Weak transcription Liver Liver
9 chr3:16949200-16953800 Weak transcription Brain Inferior Temporal Lobe brain
10 chr3:16949200-16954000 Weak transcription Small Intestine intestine
11 chr3:16949200-16954200 Weak transcription Fetal Thymus thymus
12 chr3:16949200-16954200 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr3:16949200-16954400 Enhancers Primary T helper naive cells from peripheral blood blood
14 chr3:16949200-16954400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr3:16949200-16958400 Weak transcription iPS-15b Cell Line embryonic stem cell
16 chr3:16949200-16958400 Weak transcription Adipose Nuclei Adipose
17 chr3:16949200-16958400 Weak transcription Gastric stomach
18 chr3:16949200-16958800 Weak transcription Duodenum Mucosa Duodenum
19 chr3:16949200-16961200 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr3:16949400-16958400 Weak transcription Stomach Mucosa stomach
21 chr3:16949800-16958400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr3:16950000-16958600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr3:16950200-16957000 Weak transcription Primary hematopoietic stem cells short term culture blood
24 chr3:16951800-16969200 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr3:16952000-16953800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
26 chr3:16952000-16954000 Weak transcription Primary T cells from cord blood blood
27 chr3:16952000-16954000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
28 chr3:16952000-16954200 Weak transcription Right Ventricle heart
29 chr3:16952000-16954200 Weak transcription Spleen Spleen
30 chr3:16952000-16957200 Weak transcription Right Atrium heart
31 chr3:16952000-16958400 Weak transcription Pancreas Pancrea
32 chr3:16952200-16953400 Weak transcription Primary neutrophils fromperipheralblood blood
33 chr3:16952200-16953800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr3:16952200-16953800 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr3:16952200-16954000 Weak transcription Brain Angular Gyrus brain
36 chr3:16952200-16954000 Weak transcription Brain Anterior Caudate brain
37 chr3:16952200-16954000 Weak transcription Left Ventricle heart
38 chr3:16952200-16954000 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr3:16952200-16954400 Weak transcription Brain Substantia Nigra brain
40 chr3:16952400-16953400 Weak transcription Primary T helper naive cells fromperipheralblood blood
41 chr3:16952400-16953400 Weak transcription Primary T killer memory cells from peripheral blood blood
42 chr3:16952400-16953800 Enhancers Primary B cells from cord blood blood
43 chr3:16952400-16953800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
44 chr3:16952400-16954000 Weak transcription Fetal Heart heart
45 chr3:16952600-16957600 Weak transcription Fetal Adrenal Gland Adrenal Gland
46 chr3:16952800-16954000 Weak transcription Primary T cells fromperipheralblood blood
47 chr3:16952800-16954200 Weak transcription Psoas Muscle Psoas
48 chr3:16952800-16955600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
49 chr3:16952800-16964600 Weak transcription Ovary ovary
50 chr3:16953000-16953600 Flanking Active TSS GM12878-XiMat blood

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Last update: Aug 31, 2015