Variant report

Variant	rs4685404
Chromosome Location	chr3:16978642-16978643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:16971569..16973509-chr3:16977702..16980574,2	K562	blood:
2	chr3:16967326..16970983-chr3:16976551..16980496,4	K562	blood:
3	chr3:16967326..16970983-chr3:16976849..16980496,3	K562	blood:
4	chr3:16977790..16979342-chr3:16983093..16986070,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10865746	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11128815	0.89[ASN][1000 genomes]
rs11717329	0.93[ASN][1000 genomes]
rs11926952	0.96[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12233492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12487288	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12497667	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12497953	0.89[ASN][1000 genomes]
rs13058764	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13059347	0.90[ASN][1000 genomes]
rs13071645	0.93[ASN][1000 genomes]
rs13080108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13317381	0.90[ASN][1000 genomes]
rs1348109	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1441035	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1441039	0.84[ASN][1000 genomes]
rs17272796	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1806555	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs1806556	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1837697	0.89[ASN][1000 genomes]
rs1837698	0.84[ASN][1000 genomes]
rs2014490	0.86[JPT][hapmap]
rs34149515	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35319117	0.88[ASN][1000 genomes]
rs3906814	0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs3924971	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4234539	0.87[ASN][1000 genomes]
rs4295151	0.87[ASN][1000 genomes]
rs4334629	0.80[CEU][hapmap];0.90[JPT][hapmap]
rs4353792	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4423750	0.88[ASN][1000 genomes]
rs4461404	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4472039	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4535211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4561816	0.82[ASN][1000 genomes]
rs4596131	0.87[ASN][1000 genomes]
rs4602367	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4618210	0.84[JPT][hapmap]
rs4684308	0.82[JPT][hapmap]
rs4685405	0.86[JPT][hapmap]
rs4685408	0.90[ASN][1000 genomes]
rs4685409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4685418	0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4685420	0.88[ASN][1000 genomes]
rs4685421	0.89[ASN][1000 genomes]
rs4685426	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs4685427	0.85[JPT][hapmap]
rs55748719	0.89[ASN][1000 genomes]
rs6442660	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs6762816	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6776032	0.87[ASN][1000 genomes]
rs6780191	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6781611	0.97[ASN][1000 genomes]
rs6797029	0.89[ASN][1000 genomes]
rs6805534	0.89[ASN][1000 genomes]
rs6807144	0.92[ASN][1000 genomes]
rs6809087	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7610811	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7611127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7612044	0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7617672	0.96[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7629171	0.95[ASN][1000 genomes]
rs7645335	0.89[ASN][1000 genomes]
rs7653027	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9810017	0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9824172	0.86[JPT][hapmap]
rs9830460	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs9841259	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs9844888	0.88[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs9854760	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9862613	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs9879150	0.95[JPT][hapmap]
rs9880307	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9881521	0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs9883633	0.83[CEU][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs9985404	0.89[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:16958000-16981800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:16959400-16986600	Weak transcription	Aorta	Aorta
3	chr3:16965000-16979000	Weak transcription	Lung	lung
4	chr3:16967000-16985000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:16971600-16982400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:16972400-16983600	Weak transcription	Brain Angular Gyrus	brain
7	chr3:16973400-16980400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr3:16973800-16985000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr3:16974200-16982600	Enhancers	Fetal Heart	heart
10	chr3:16974800-16984800	Weak transcription	Stomach Mucosa	stomach
11	chr3:16975400-16978800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:16975600-16985000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:16975600-16985800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr3:16975800-16985000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr3:16976000-16983800	Weak transcription	Pancreas	Pancrea
16	chr3:16976200-16981400	Weak transcription	Right Atrium	heart
17	chr3:16976400-16982400	Weak transcription	Right Ventricle	heart
18	chr3:16976400-16982400	Weak transcription	Spleen	Spleen
19	chr3:16976400-16983800	Weak transcription	Gastric	stomach
20	chr3:16977000-16979400	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr3:16977200-16979200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr3:16977200-16979400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr3:16977200-16980200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:16977400-16979200	Enhancers	H1 Cell Line	embryonic stem cell
25	chr3:16977400-16979200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr3:16977400-16979200	Enhancers	Fetal Thymus	thymus
27	chr3:16977400-16979200	Enhancers	Ovary	ovary
28	chr3:16977400-16979400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr3:16977400-16979400	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr3:16977400-16979400	Enhancers	Primary B cells from peripheral blood	blood
31	chr3:16977400-16979400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:16977400-16980400	Enhancers	Psoas Muscle	Psoas
33	chr3:16977600-16978800	Flanking Active TSS	Primary T cells from cord blood	blood
34	chr3:16977600-16979000	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr3:16977600-16979200	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr3:16977600-16979800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr3:16977800-16979200	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr3:16977800-16979200	Enhancers	Primary T cells fromperipheralblood	blood
39	chr3:16977800-16979200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr3:16977800-16987400	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr3:16978000-16978800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr3:16978000-16979800	Weak transcription	Small Intestine	intestine
43	chr3:16978000-16980000	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr3:16978000-16985800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr3:16978000-16991200	Weak transcription	Adipose Nuclei	Adipose
46	chr3:16978200-16979400	Enhancers	Primary B cells from cord blood	blood
47	chr3:16978200-16981400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr3:16978200-16983000	Weak transcription	Liver	Liver
49	chr3:16978400-16979000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
50	chr3:16978400-16979200	Enhancers	Left Ventricle	heart

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