Variant report

Variant	rs4684308
Chromosome Location	chr3:17079262-17079263
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17077235..17080133-chr3:17081662..17084090,3	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10865746	0.81[JPT][hapmap]
rs11128813	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11128814	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11717433	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11717649	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11721224	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11915356	0.83[ASN][1000 genomes]
rs11926952	0.82[JPT][hapmap]
rs12108065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12233492	0.86[JPT][hapmap]
rs12487288	0.81[JPT][hapmap]
rs12488103	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12491516	0.98[ASN][1000 genomes]
rs12492983	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12494582	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12495362	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12497667	0.82[JPT][hapmap]
rs13058764	0.81[JPT][hapmap]
rs13080108	0.82[JPT][hapmap]
rs1372071	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1441035	0.81[JPT][hapmap]
rs17042909	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17042920	0.82[ASN][1000 genomes]
rs17272796	0.81[JPT][hapmap]
rs1806555	0.85[JPT][hapmap]
rs2014490	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs34322012	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3796299	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3906814	0.94[JPT][hapmap]
rs3924971	0.82[JPT][hapmap]
rs4131153	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4289331	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4334629	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs4353792	0.82[JPT][hapmap]
rs4383507	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4402923	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4416363	0.89[ASN][1000 genomes]
rs4452313	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4461404	0.81[JPT][hapmap]
rs4472039	0.82[JPT][hapmap]
rs4535211	0.81[JPT][hapmap]
rs4577450	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4602367	0.82[JPT][hapmap]
rs4684305	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4684306	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4684307	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4685404	0.82[JPT][hapmap]
rs4685405	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs4685409	0.81[JPT][hapmap]
rs4685410	0.81[AMR][1000 genomes]
rs4685411	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4685418	0.85[JPT][hapmap]
rs4685419	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4685423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4685424	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4685425	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4685426	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs58679681	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58750701	0.83[ASN][1000 genomes]
rs58765457	0.83[ASN][1000 genomes]
rs59737477	0.83[AMR][1000 genomes]
rs62246033	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62247183	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62247186	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62247188	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62247190	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62247256	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6442660	0.82[JPT][hapmap]
rs6762816	0.81[JPT][hapmap]
rs6777357	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6780191	0.81[JPT][hapmap]
rs6796352	0.94[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6803135	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6806862	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6809087	0.81[JPT][hapmap]
rs7611127	0.81[JPT][hapmap]
rs7612044	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7617672	0.82[JPT][hapmap]
rs7617779	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7634374	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7639882	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7648912	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7653027	0.81[JPT][hapmap]
rs7653834	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs964576	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9810017	0.82[JPT][hapmap]
rs9821630	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9824172	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs9825009	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9844888	0.95[JPT][hapmap]
rs9853476	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9854760	0.80[JPT][hapmap]
rs9879150	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs9880307	0.81[JPT][hapmap]
rs9883633	0.85[CHB][hapmap];0.89[JPT][hapmap]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17053600-17080600	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:17053800-17086800	Weak transcription	Fetal Stomach	stomach
3	chr3:17055400-17088800	Weak transcription	Thymus	Thymus
4	chr3:17055600-17079800	Weak transcription	Small Intestine	intestine
5	chr3:17055800-17087800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:17057600-17080600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:17058600-17082400	Weak transcription	Fetal Intestine Large	intestine
8	chr3:17060000-17082200	Weak transcription	Fetal Intestine Small	intestine
9	chr3:17060000-17088600	Weak transcription	Pancreas	Pancrea
10	chr3:17060200-17081000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr3:17065600-17081200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:17069400-17085600	Weak transcription	Aorta	Aorta
13	chr3:17069600-17080800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:17070000-17093600	Weak transcription	Fetal Lung	lung
15	chr3:17071400-17079800	Weak transcription	Lung	lung
16	chr3:17071400-17080600	Weak transcription	Gastric	stomach
17	chr3:17071800-17080600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr3:17072200-17079800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:17072800-17080200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr3:17072800-17080600	Weak transcription	Esophagus	oesophagus
21	chr3:17072800-17085600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr3:17073000-17080200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:17073000-17088800	Weak transcription	Right Atrium	heart
24	chr3:17073000-17093000	Weak transcription	Spleen	Spleen
25	chr3:17073200-17080600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr3:17073200-17085200	Weak transcription	Placenta	Placenta
27	chr3:17073200-17085400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr3:17074000-17084400	Weak transcription	Liver	Liver
29	chr3:17074400-17079800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr3:17074800-17080600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr3:17075000-17079800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr3:17075400-17080400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr3:17075800-17080200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr3:17075800-17080400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr3:17075800-17080600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr3:17075800-17081000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr3:17076400-17085600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr3:17076600-17086800	Weak transcription	Dnd41	blood
39	chr3:17076800-17085200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr3:17077000-17079800	Weak transcription	Primary B cells from cord blood	blood
41	chr3:17077000-17082000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr3:17077000-17086800	Weak transcription	Fetal Thymus	thymus
43	chr3:17077200-17079800	Weak transcription	Fetal Heart	heart
44	chr3:17077200-17080600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr3:17077200-17083800	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr3:17077400-17080600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:17077400-17080600	Weak transcription	Brain Substantia Nigra	brain
48	chr3:17077400-17080800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr3:17077400-17084200	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr3:17077400-17085600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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