Variant report

Variant	rs9844888
Chromosome Location	chr3:17066421-17066422
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10865746	0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs11128813	0.82[JPT][hapmap]
rs11128815	0.86[ASN][1000 genomes]
rs11717329	0.82[ASN][1000 genomes]
rs11926952	0.83[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs12108065	0.86[JPT][hapmap]
rs12233492	0.87[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs12487288	0.82[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs12492983	0.86[JPT][hapmap]
rs12497667	0.82[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs12497953	0.90[ASN][1000 genomes]
rs13058764	0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs13059347	0.87[ASN][1000 genomes]
rs13071645	0.83[ASN][1000 genomes]
rs13080108	0.86[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs1372071	0.86[JPT][hapmap]
rs1441035	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs17042909	0.86[JPT][hapmap]
rs17272796	0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs1806555	0.94[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1806556	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs2014490	0.81[JPT][hapmap]
rs34322012	0.86[JPT][hapmap]
rs35319117	0.89[ASN][1000 genomes]
rs3796299	0.86[JPT][hapmap]
rs3906814	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3924971	0.82[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs4131153	0.86[JPT][hapmap]
rs4234539	0.88[ASN][1000 genomes]
rs4289331	0.86[JPT][hapmap]
rs4295151	0.90[ASN][1000 genomes]
rs4353792	0.82[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs4383507	0.86[JPT][hapmap]
rs4402923	0.86[JPT][hapmap]
rs4423750	0.89[ASN][1000 genomes]
rs4452313	0.87[JPT][hapmap]
rs4461404	0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4472039	0.82[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs4535211	0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs4577450	0.85[JPT][hapmap]
rs4596131	0.90[ASN][1000 genomes]
rs4602367	0.88[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs4684305	0.86[JPT][hapmap]
rs4684306	0.86[JPT][hapmap]
rs4684307	0.86[JPT][hapmap]
rs4684308	0.95[JPT][hapmap]
rs4685404	0.88[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs4685409	0.87[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4685411	0.87[JPT][hapmap]
rs4685418	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4685420	0.89[ASN][1000 genomes]
rs4685421	0.88[ASN][1000 genomes]
rs4685423	0.86[JPT][hapmap]
rs4685424	0.86[JPT][hapmap]
rs4685425	0.87[JPT][hapmap]
rs55748719	0.88[ASN][1000 genomes]
rs6442660	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs6762816	0.82[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs6776032	0.88[ASN][1000 genomes]
rs6780191	0.87[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs6781611	0.82[ASN][1000 genomes]
rs6796352	0.81[JPT][hapmap]
rs6797029	0.90[ASN][1000 genomes]
rs6807144	0.81[ASN][1000 genomes]
rs6809087	0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs7611127	0.87[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs7612044	0.96[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs7617672	0.83[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs7617779	0.90[JPT][hapmap]
rs7629171	0.84[ASN][1000 genomes]
rs7639882	0.86[JPT][hapmap]
rs7648912	0.86[JPT][hapmap]
rs7653027	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs7653834	0.86[JPT][hapmap]
rs964576	0.82[CHB][hapmap];0.80[JPT][hapmap]
rs9810017	0.83[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs9821630	0.91[JPT][hapmap]
rs9825009	0.86[JPT][hapmap]
rs9830460	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs9841259	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs9853476	0.86[JPT][hapmap]
rs9854760	0.82[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs9862613	0.90[CHB][hapmap]
rs9879150	0.81[JPT][hapmap]
rs9880307	0.86[JPT][hapmap]
rs9881521	0.91[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs9985404	0.88[ASN][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17051600-17075000	Weak transcription	Fetal Brain Male	brain
2	chr3:17053200-17069000	Weak transcription	Aorta	Aorta
3	chr3:17053200-17069000	Weak transcription	Fetal Lung	lung
4	chr3:17053400-17072600	Weak transcription	Ovary	ovary
5	chr3:17053600-17071000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:17053600-17076200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:17053600-17080600	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:17053800-17068400	Weak transcription	Adipose Nuclei	Adipose
9	chr3:17053800-17086800	Weak transcription	Fetal Stomach	stomach
10	chr3:17055000-17077000	Weak transcription	Fetal Brain Female	brain
11	chr3:17055200-17072000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:17055400-17070600	Weak transcription	Gastric	stomach
13	chr3:17055400-17074200	Weak transcription	Brain Anterior Caudate	brain
14	chr3:17055400-17088800	Weak transcription	Thymus	Thymus
15	chr3:17055600-17079800	Weak transcription	Small Intestine	intestine
16	chr3:17055800-17087800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr3:17057200-17066800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr3:17057400-17068400	Weak transcription	Liver	Liver
19	chr3:17057400-17076200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr3:17057600-17080600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr3:17058200-17074000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:17058600-17071600	Weak transcription	Fetal Heart	heart
23	chr3:17058600-17077000	Weak transcription	Right Ventricle	heart
24	chr3:17058600-17082400	Weak transcription	Fetal Intestine Large	intestine
25	chr3:17059800-17073000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr3:17060000-17069000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr3:17060000-17069000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr3:17060000-17069000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr3:17060000-17070200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr3:17060000-17072800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr3:17060000-17074600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr3:17060000-17082200	Weak transcription	Fetal Intestine Small	intestine
33	chr3:17060000-17088600	Weak transcription	Pancreas	Pancrea
34	chr3:17060200-17081000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr3:17061800-17073200	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr3:17062800-17066600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr3:17062800-17066800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr3:17063600-17068600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr3:17064000-17066600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr3:17064400-17066600	Enhancers	Psoas Muscle	Psoas
41	chr3:17064600-17069600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr3:17064600-17071400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr3:17064800-17067800	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr3:17064800-17069200	Weak transcription	Primary B cells from cord blood	blood
45	chr3:17064800-17071000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:17064800-17071400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr3:17064800-17071400	Weak transcription	Spleen	Spleen
48	chr3:17065000-17071200	Weak transcription	Stomach Mucosa	stomach
49	chr3:17065200-17066600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr3:17065200-17067800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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