Variant report

Variant	rs4602367
Chromosome Location	chr3:17053499-17053500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10865746	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11128815	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11717329	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11926952	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12233492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12487288	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12497667	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12497953	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13058764	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13059347	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13071645	0.84[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13080108	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13080782	0.84[EUR][1000 genomes]
rs13317381	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1441035	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17272796	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1806555	0.83[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1806556	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1837697	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2014490	0.86[JPT][hapmap]
rs35319117	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3906814	0.83[CEU][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3924971	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4234539	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4295151	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4334629	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs4353792	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4423750	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4452313	0.96[YRI][hapmap]
rs4461404	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4472039	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4535211	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4561816	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4596131	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4618210	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs4684308	0.82[JPT][hapmap]
rs4685404	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4685405	0.86[JPT][hapmap]
rs4685408	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4685409	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4685415	0.80[AMR][1000 genomes]
rs4685418	0.83[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4685420	0.96[CEU][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4685421	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4685426	0.91[JPT][hapmap]
rs4685427	0.86[JPT][hapmap]
rs55748719	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6442660	0.83[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap]
rs6762816	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6776032	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6780191	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6781611	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6797029	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6805534	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6807144	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6809087	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7610811	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7611127	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7612044	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7617672	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7629171	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7645335	0.85[CEU][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7653027	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9810017	0.85[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9824172	0.86[JPT][hapmap]
rs9830460	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9841259	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9844888	0.88[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs9854760	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9862613	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9879150	0.95[JPT][hapmap]
rs9880307	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9881521	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9883633	0.90[JPT][hapmap]
rs9985404	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17045000-17053800	Weak transcription	Thymus	Thymus
2	chr3:17046800-17054200	Weak transcription	Psoas Muscle	Psoas
3	chr3:17046800-17054600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:17047000-17054200	Weak transcription	Brain Anterior Caudate	brain
5	chr3:17048200-17054200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:17048200-17054600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:17048200-17054600	Weak transcription	Gastric	stomach
8	chr3:17048200-17054600	Weak transcription	Right Atrium	heart
9	chr3:17048200-17054800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:17048400-17054000	Weak transcription	Fetal Heart	heart
11	chr3:17048400-17054600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr3:17048400-17054800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:17048400-17054800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:17048400-17054800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:17048400-17054800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:17048400-17054800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:17049400-17056200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:17049800-17053800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr3:17050000-17055800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:17050000-17056200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr3:17050200-17054600	Weak transcription	Brain Germinal Matrix	brain
22	chr3:17050200-17056200	Weak transcription	Lung	lung
23	chr3:17050200-17059200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:17050400-17054600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:17050800-17053800	Strong transcription	Primary T cells from cord blood	blood
26	chr3:17050800-17054000	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr3:17050800-17054200	Strong transcription	GM12878-XiMat	blood
28	chr3:17050800-17054400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr3:17050800-17060200	Strong transcription	Primary hematopoietic stem cells	blood
30	chr3:17050800-17061000	Strong transcription	Primary B cells from cord blood	blood
31	chr3:17051000-17053800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr3:17051000-17060000	Strong transcription	Primary B cells from peripheral blood	blood
33	chr3:17051200-17053600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:17051200-17053600	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr3:17051200-17053600	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr3:17051200-17054000	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr3:17051200-17054800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr3:17051200-17054800	Strong transcription	Placenta	Placenta
39	chr3:17051200-17055600	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr3:17051200-17055800	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr3:17051200-17060000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr3:17051200-17060200	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr3:17051200-17060800	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr3:17051400-17053600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr3:17051400-17053600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr3:17051400-17053600	Strong transcription	Fetal Muscle Leg	muscle
47	chr3:17051400-17053800	Strong transcription	Adipose Nuclei	Adipose
48	chr3:17051400-17054000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:17051400-17054600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr3:17051400-17055200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links