Variant report

Variant	rs4685426
Chromosome Location	chr3:17119238-17119239
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17110502..17112768-chr3:17117008..17119386,2	K562	blood:
2	chr3:17118420..17120285-chr3:17121140..17122882,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10865746	0.95[JPT][hapmap]
rs11128813	0.83[CHB][hapmap]
rs11926952	0.91[JPT][hapmap]
rs12108065	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs12233492	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12487288	0.90[JPT][hapmap]
rs12492983	0.82[JPT][hapmap]
rs12497667	0.91[JPT][hapmap]
rs13058764	0.90[JPT][hapmap]
rs13080108	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1372071	0.82[JPT][hapmap]
rs1441035	0.90[JPT][hapmap]
rs17042909	0.82[JPT][hapmap]
rs17272796	0.90[JPT][hapmap]
rs1806556	0.85[JPT][hapmap]
rs2014490	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs34322012	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs3796299	0.83[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs3924971	0.91[JPT][hapmap]
rs4131153	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs4289331	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs4334629	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4353792	0.95[JPT][hapmap]
rs4383507	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs4402923	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs4452313	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs4461404	0.90[JPT][hapmap]
rs4472039	0.95[JPT][hapmap]
rs4535211	0.90[JPT][hapmap]
rs4577450	0.85[JPT][hapmap]
rs4602367	0.91[JPT][hapmap]
rs4684305	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs4684306	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs4684307	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs4684308	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs4685404	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs4685405	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4685409	0.90[JPT][hapmap]
rs4685411	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs4685418	0.86[JPT][hapmap]
rs4685422	0.93[ASN][1000 genomes]
rs4685423	0.83[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs4685424	0.87[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs4685425	0.87[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs62247256	0.84[ASN][1000 genomes]
rs6442660	0.91[JPT][hapmap]
rs6762816	0.90[JPT][hapmap]
rs6775709	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6777357	0.84[ASN][1000 genomes]
rs6780191	0.90[JPT][hapmap]
rs6809087	0.90[JPT][hapmap]
rs7610811	0.82[JPT][hapmap]
rs7611127	0.90[JPT][hapmap]
rs7612044	0.91[JPT][hapmap]
rs7617672	0.91[JPT][hapmap]
rs7639882	0.82[JPT][hapmap]
rs7648912	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs7653027	0.90[JPT][hapmap]
rs7653834	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs964576	0.82[CHB][hapmap];0.80[JPT][hapmap]
rs9810017	0.91[JPT][hapmap]
rs9821630	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs9824172	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9825009	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs9830460	0.85[JPT][hapmap]
rs9841259	0.85[JPT][hapmap]
rs9853476	0.82[JPT][hapmap]
rs9854760	0.94[JPT][hapmap]
rs9862613	0.84[JPT][hapmap]
rs9879150	0.80[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9880307	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs9881521	0.86[JPT][hapmap]
rs9883633	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17089400-17135000	Weak transcription	Pancreas	Pancrea
2	chr3:17095400-17120600	Weak transcription	Aorta	Aorta
3	chr3:17095400-17120600	Weak transcription	Lung	lung
4	chr3:17097600-17120400	Weak transcription	Spleen	Spleen
5	chr3:17103400-17134400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr3:17107000-17133400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:17107200-17126200	Weak transcription	Fetal Kidney	kidney
8	chr3:17107600-17122800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:17108200-17120600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr3:17109800-17120800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:17110800-17132200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:17111400-17129400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:17111800-17130600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:17112000-17132000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr3:17112200-17137400	Weak transcription	Brain Germinal Matrix	brain
16	chr3:17112600-17120600	Weak transcription	Gastric	stomach
17	chr3:17112600-17120600	Weak transcription	Ovary	ovary
18	chr3:17112600-17120800	Weak transcription	Adipose Nuclei	Adipose
19	chr3:17112600-17123000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:17112600-17124000	Weak transcription	Fetal Intestine Large	intestine
21	chr3:17112600-17124600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr3:17112600-17126000	Weak transcription	Fetal Brain Female	brain
23	chr3:17112600-17127800	Weak transcription	Fetal Lung	lung
24	chr3:17112600-17129600	Weak transcription	Brain Angular Gyrus	brain
25	chr3:17112600-17130200	Weak transcription	Brain Anterior Caudate	brain
26	chr3:17112600-17135800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr3:17112800-17119600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:17112800-17119800	Weak transcription	Fetal Stomach	stomach
29	chr3:17112800-17131200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr3:17112800-17135200	Weak transcription	Fetal Brain Male	brain
31	chr3:17114400-17126800	Strong transcription	Primary B cells from cord blood	blood
32	chr3:17114400-17131600	Weak transcription	Colonic Mucosa	Colon
33	chr3:17116000-17119600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr3:17116000-17121200	Strong transcription	Placenta	Placenta
35	chr3:17116200-17120800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr3:17116400-17122200	Weak transcription	Primary hematopoietic stem cells	blood
37	chr3:17116400-17122400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr3:17116400-17122800	Weak transcription	Fetal Thymus	thymus
39	chr3:17116600-17120000	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr3:17116600-17122800	Strong transcription	Primary T cells from cord blood	blood
41	chr3:17116800-17126000	Weak transcription	Dnd41	blood
42	chr3:17116800-17130200	Weak transcription	Thymus	Thymus
43	chr3:17117400-17125000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr3:17117400-17127600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr3:17117600-17120600	Weak transcription	Liver	Liver
46	chr3:17117800-17122600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr3:17117800-17127600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr3:17117800-17128000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr3:17118000-17119400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr3:17118000-17119600	Enhancers	Left Ventricle	heart

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