Variant report

Variant	rs4685422
Chromosome Location	chr3:17110874-17110875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17110502..17112768-chr3:17117008..17119386,2	K562	blood:
2	chr3:17109611..17112093-chr3:17130778..17133549,3	K562	blood:

rs_ID	r²[population]
rs10865746	0.95[YRI][hapmap]
rs11721224	0.84[ASN][1000 genomes]
rs11926952	0.80[YRI][hapmap]
rs12108065	0.80[ASN][1000 genomes]
rs12487288	0.82[YRI][hapmap]
rs12491516	0.80[ASN][1000 genomes]
rs12497667	0.91[YRI][hapmap]
rs13058764	1.00[YRI][hapmap]
rs1441035	1.00[YRI][hapmap]
rs17272796	0.83[YRI][hapmap]
rs3796299	0.89[ASN][1000 genomes]
rs4334629	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4353792	0.83[YRI][hapmap]
rs4535211	1.00[YRI][hapmap]
rs4685409	0.86[YRI][hapmap]
rs4685420	0.91[YRI][hapmap]
rs4685423	0.89[ASN][1000 genomes]
rs4685424	0.89[ASN][1000 genomes]
rs4685425	0.89[ASN][1000 genomes]
rs4685426	0.93[ASN][1000 genomes]
rs62247256	0.89[ASN][1000 genomes]
rs6442660	0.91[YRI][hapmap]
rs6775709	0.90[ASN][1000 genomes]
rs6777357	0.89[ASN][1000 genomes]
rs6809087	1.00[YRI][hapmap]
rs7610811	1.00[YRI][hapmap]
rs7611127	1.00[YRI][hapmap]
rs7612044	0.86[YRI][hapmap]
rs9637429	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9810017	1.00[YRI][hapmap]
rs9830460	0.86[YRI][hapmap]
rs9854760	0.95[YRI][hapmap]

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17081200-17111400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:17083200-17111600	Weak transcription	Stomach Mucosa	stomach
3	chr3:17085800-17112200	Weak transcription	Gastric	stomach
4	chr3:17089400-17135000	Weak transcription	Pancreas	Pancrea
5	chr3:17089600-17111000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:17089800-17112200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:17089800-17116000	Weak transcription	Thymus	Thymus
8	chr3:17094800-17112200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:17095000-17112000	Weak transcription	Right Atrium	heart
10	chr3:17095200-17112200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr3:17095400-17114400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr3:17095400-17120600	Weak transcription	Aorta	Aorta
13	chr3:17095400-17120600	Weak transcription	Lung	lung
14	chr3:17095800-17111600	Weak transcription	Brain Germinal Matrix	brain
15	chr3:17096600-17118000	Weak transcription	Fetal Intestine Small	intestine
16	chr3:17097200-17112000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:17097200-17112000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr3:17097200-17113600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:17097600-17112200	Weak transcription	Fetal Stomach	stomach
20	chr3:17097600-17120400	Weak transcription	Spleen	Spleen
21	chr3:17099000-17112200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:17101600-17111600	Weak transcription	Fetal Brain Female	brain
23	chr3:17102000-17112200	Weak transcription	Ovary	ovary
24	chr3:17103400-17134400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr3:17103600-17112200	Weak transcription	Right Ventricle	heart
26	chr3:17104600-17111600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr3:17106800-17113200	Strong transcription	Primary B cells from cord blood	blood
28	chr3:17106800-17118200	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr3:17107000-17133400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr3:17107200-17114800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr3:17107200-17126200	Weak transcription	Fetal Kidney	kidney
32	chr3:17107600-17116400	Strong transcription	Primary B cells from peripheral blood	blood
33	chr3:17107600-17122800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr3:17107800-17111600	Weak transcription	Psoas Muscle	Psoas
35	chr3:17107800-17112600	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr3:17108000-17111400	Weak transcription	K562	blood
37	chr3:17108200-17120600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr3:17108400-17111800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr3:17108600-17118600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:17108800-17112800	Strong transcription	Primary T cells from cord blood	blood
41	chr3:17108800-17113000	Strong transcription	Primary hematopoietic stem cells	blood
42	chr3:17109000-17111000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr3:17109000-17111200	Strong transcription	Liver	Liver
44	chr3:17109000-17112000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr3:17109000-17112400	Strong transcription	Placenta	Placenta
46	chr3:17109000-17112600	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr3:17109000-17112600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr3:17109000-17112800	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr3:17109000-17112800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr3:17109000-17117000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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