The 2.0 version of rSNPBase

Variant report

Variant rs62247256
Chromosome Location chr3:17116059-17116060
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:17089400-17135000 Weak transcription Pancreas Pancrea
2 chr3:17095400-17120600 Weak transcription Aorta Aorta
3 chr3:17095400-17120600 Weak transcription Lung lung
4 chr3:17096600-17118000 Weak transcription Fetal Intestine Small intestine
5 chr3:17097600-17120400 Weak transcription Spleen Spleen
6 chr3:17103400-17134400 Strong transcription Monocytes-CD14+_RO01746 blood
7 chr3:17106800-17118200 Strong transcription Primary monocytes fromperipheralblood blood
8 chr3:17107000-17133400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr3:17107200-17126200 Weak transcription Fetal Kidney kidney
10 chr3:17107600-17116400 Strong transcription Primary B cells from peripheral blood blood
11 chr3:17107600-17122800 Weak transcription Fetal Muscle Trunk muscle
12 chr3:17108200-17120600 Weak transcription Stomach Smooth Muscle stomach
13 chr3:17108600-17118600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr3:17109000-17117000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr3:17109800-17120800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr3:17110800-17132200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
17 chr3:17111400-17129400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr3:17111800-17130600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr3:17112000-17132000 Weak transcription Duodenum Mucosa Duodenum
20 chr3:17112200-17116200 Strong transcription GM12878-XiMat blood
21 chr3:17112200-17118600 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr3:17112200-17137400 Weak transcription Brain Germinal Matrix brain
23 chr3:17112400-17118400 Weak transcription Right Atrium heart
24 chr3:17112600-17116800 Weak transcription iPS-20b Cell Line embryonic stem cell
25 chr3:17112600-17118000 Weak transcription Psoas Muscle Psoas
26 chr3:17112600-17118600 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr3:17112600-17118600 Weak transcription Fetal Heart heart
28 chr3:17112600-17120600 Weak transcription Gastric stomach
29 chr3:17112600-17120600 Weak transcription Ovary ovary
30 chr3:17112600-17120800 Weak transcription Adipose Nuclei Adipose
31 chr3:17112600-17123000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
32 chr3:17112600-17124000 Weak transcription Fetal Intestine Large intestine
33 chr3:17112600-17124600 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr3:17112600-17126000 Weak transcription Fetal Brain Female brain
35 chr3:17112600-17127800 Weak transcription Fetal Lung lung
36 chr3:17112600-17129600 Weak transcription Brain Angular Gyrus brain
37 chr3:17112600-17130200 Weak transcription Brain Anterior Caudate brain
38 chr3:17112600-17135800 Weak transcription H1 Cell Line embryonic stem cell
39 chr3:17112800-17117200 Weak transcription iPS-18 Cell Line embryonic stem cell
40 chr3:17112800-17117400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
41 chr3:17112800-17118000 Weak transcription Left Ventricle heart
42 chr3:17112800-17118200 Weak transcription Brain Cingulate Gyrus brain
43 chr3:17112800-17118400 Weak transcription Skeletal Muscle Male skeletal muscle
44 chr3:17112800-17118400 Weak transcription Skeletal Muscle Female skeletal muscle
45 chr3:17112800-17119600 Weak transcription Primary hematopoietic stem cells short term culture blood
46 chr3:17112800-17119800 Weak transcription Fetal Stomach stomach
47 chr3:17112800-17131200 Weak transcription Rectal Mucosa Donor 29 rectum
48 chr3:17112800-17135200 Weak transcription Fetal Brain Male brain
49 chr3:17113600-17116800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
50 chr3:17113800-17116800 Enhancers Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015