Variant report

Variant	rs4577450
Chromosome Location	chr3:17083824-17083825
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17077235..17080133-chr3:17081662..17084090,3	K562	blood:
2	chr3:17077235..17079124-chr3:17082196..17084090,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11128813	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11128814	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11717433	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11717649	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11721224	0.82[ASN][1000 genomes]
rs11915356	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12108065	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12233492	0.85[JPT][hapmap]
rs12488103	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12491516	0.97[ASN][1000 genomes]
rs12492983	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12494582	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12495362	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13080108	0.80[JPT][hapmap]
rs1372071	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17042909	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17042920	0.82[ASN][1000 genomes]
rs2014490	0.90[JPT][hapmap]
rs34322012	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3796299	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3906814	0.85[JPT][hapmap]
rs4131153	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4289331	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4334629	0.85[JPT][hapmap]
rs4353792	0.81[JPT][hapmap]
rs4383507	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4402923	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4416363	0.88[ASN][1000 genomes]
rs4452313	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4472039	0.81[JPT][hapmap]
rs4684305	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4684306	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4684307	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4684308	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4685405	0.90[JPT][hapmap]
rs4685411	0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4685418	0.80[JPT][hapmap]
rs4685419	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4685423	0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4685424	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4685425	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4685426	0.85[JPT][hapmap]
rs58679681	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58750701	0.83[ASN][1000 genomes]
rs58765457	0.84[ASN][1000 genomes]
rs62246033	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62247183	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62247186	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247188	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62247190	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62247256	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6777357	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6796352	0.82[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6803135	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6806862	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7617779	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7634374	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7639882	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7648912	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7653834	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs964576	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9821630	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9824172	0.80[CEU][hapmap];0.90[JPT][hapmap]
rs9825009	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9844888	0.85[JPT][hapmap]
rs9853476	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9854760	0.80[JPT][hapmap]
rs9883633	0.84[JPT][hapmap]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17053800-17086800	Weak transcription	Fetal Stomach	stomach
2	chr3:17055400-17088800	Weak transcription	Thymus	Thymus
3	chr3:17055800-17087800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:17060000-17088600	Weak transcription	Pancreas	Pancrea
5	chr3:17069400-17085600	Weak transcription	Aorta	Aorta
6	chr3:17070000-17093600	Weak transcription	Fetal Lung	lung
7	chr3:17072800-17085600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr3:17073000-17088800	Weak transcription	Right Atrium	heart
9	chr3:17073000-17093000	Weak transcription	Spleen	Spleen
10	chr3:17073200-17085200	Weak transcription	Placenta	Placenta
11	chr3:17073200-17085400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr3:17074000-17084400	Weak transcription	Liver	Liver
13	chr3:17076400-17085600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:17076600-17086800	Weak transcription	Dnd41	blood
15	chr3:17076800-17085200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr3:17077000-17086800	Weak transcription	Fetal Thymus	thymus
17	chr3:17077400-17084200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:17077400-17085600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr3:17077400-17094600	Weak transcription	Psoas Muscle	Psoas
20	chr3:17077800-17084000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr3:17077800-17086800	Weak transcription	Ovary	ovary
22	chr3:17079800-17090000	Strong transcription	Primary B cells from cord blood	blood
23	chr3:17080800-17090200	Weak transcription	Fetal Muscle Leg	muscle
24	chr3:17081000-17084200	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr3:17081000-17084600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:17081000-17085600	Weak transcription	Esophagus	oesophagus
27	chr3:17081000-17085600	Weak transcription	Gastric	stomach
28	chr3:17081000-17088800	Weak transcription	Lung	lung
29	chr3:17081200-17084000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr3:17081200-17084400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:17081200-17087200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr3:17081200-17111400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr3:17081400-17084000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr3:17081400-17084000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:17081400-17084200	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr3:17081400-17085400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr3:17081400-17085400	Weak transcription	Adipose Nuclei	Adipose
38	chr3:17081400-17087400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr3:17081600-17087200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr3:17081600-17090000	Strong transcription	Primary T cells from cord blood	blood
41	chr3:17081600-17090200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr3:17081800-17084000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr3:17081800-17090000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr3:17082200-17084200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr3:17082200-17085600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr3:17082200-17086800	Weak transcription	Small Intestine	intestine
47	chr3:17082200-17087200	Weak transcription	Colonic Mucosa	Colon
48	chr3:17082200-17089800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr3:17082400-17085600	Weak transcription	Right Ventricle	heart
50	chr3:17082400-17085800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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