Variant report

Variant	rs4685411
Chromosome Location	chr3:17018256-17018257
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11128812	0.83[ASN][1000 genomes]
rs11128813	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.88[ASN][1000 genomes]
rs11128814	0.88[ASN][1000 genomes]
rs11717433	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11717649	0.88[ASN][1000 genomes]
rs11915356	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12108065	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12233492	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs12488103	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12491516	0.88[ASN][1000 genomes]
rs12492983	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12494582	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12495362	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13080108	0.80[CHB][hapmap]
rs1372071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17042909	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17042920	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1806555	0.82[JPT][hapmap]
rs2014490	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs34322012	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3796299	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3906814	0.85[JPT][hapmap]
rs4131153	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4289331	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4334629	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4383507	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[ASN][1000 genomes]
rs4402923	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4416363	0.95[ASN][1000 genomes]
rs4452313	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4577450	0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4684305	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4684306	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4684307	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4684308	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4685405	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs4685416	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4685419	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4685423	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4685424	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4685425	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4685426	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs58679681	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58750701	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58765457	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62246033	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62247183	0.88[ASN][1000 genomes]
rs62247186	0.86[ASN][1000 genomes]
rs62247190	0.85[ASN][1000 genomes]
rs62247256	0.81[ASN][1000 genomes]
rs6777357	0.81[ASN][1000 genomes]
rs6796352	0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs6803135	0.88[ASN][1000 genomes]
rs6806862	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7612044	0.82[CHB][hapmap]
rs7617779	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7634374	0.87[ASN][1000 genomes]
rs7639882	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7648912	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7653834	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs964576	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9821630	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs9824172	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs9825009	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9844888	0.87[JPT][hapmap]
rs9853476	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9879150	0.90[CHB][hapmap];0.80[ASN][1000 genomes]
rs9883633	0.90[CHB][hapmap];0.85[JPT][hapmap]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17009200-17026600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:17014800-17019600	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr3:17014800-17033600	Weak transcription	Primary T cells from cord blood	blood
4	chr3:17014800-17038800	Weak transcription	Primary B cells from cord blood	blood
5	chr3:17015000-17019400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:17015600-17019000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:17016000-17020000	Weak transcription	Aorta	Aorta
8	chr3:17016000-17020600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:17016200-17019800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:17016200-17027200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:17016400-17032200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr3:17016600-17026600	Weak transcription	Fetal Heart	heart
13	chr3:17017000-17028600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr3:17017000-17029800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:17017200-17019200	Weak transcription	Osteobl	bone
16	chr3:17017400-17023200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr3:17017400-17026600	Weak transcription	Right Ventricle	heart
18	chr3:17017400-17027200	Weak transcription	Ovary	ovary
19	chr3:17017400-17027400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr3:17017400-17027400	Weak transcription	Right Atrium	heart
21	chr3:17017600-17019200	Weak transcription	Psoas Muscle	Psoas
22	chr3:17017600-17020000	Weak transcription	Adipose Nuclei	Adipose
23	chr3:17017600-17020000	Weak transcription	Pancreas	Pancrea
24	chr3:17017600-17021400	Weak transcription	Left Ventricle	heart
25	chr3:17017600-17022000	Weak transcription	Lung	lung
26	chr3:17017600-17023200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr3:17017800-17018800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:17018000-17023200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr3:17018200-17019400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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