Variant report

Variant	rs12492983
Chromosome Location	chr3:16990750-16990751
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:16989510..16991310-chr3:16993095..16995691,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11128812	0.89[ASN][1000 genomes]
rs11128813	0.85[ASW][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.82[TSI][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11128814	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11717433	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11717649	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11915356	0.98[ASN][1000 genomes]
rs12108065	0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12233492	0.81[JPT][hapmap]
rs12488103	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12491516	0.83[ASN][1000 genomes]
rs12494582	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12495362	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1372071	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17042909	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17042920	0.97[ASN][1000 genomes]
rs1806555	0.81[JPT][hapmap]
rs2014490	0.83[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs34322012	0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3796299	0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs3906814	0.84[JPT][hapmap]
rs4131153	0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.86[ASN][1000 genomes]
rs4289331	0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs4334629	0.83[CHB][hapmap];0.83[CHD][hapmap];0.82[JPT][hapmap]
rs4383507	0.85[ASW][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.82[TSI][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4402923	0.95[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs4416363	0.88[ASN][1000 genomes]
rs4452313	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4577450	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4684305	0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4684306	0.95[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4684307	0.95[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs4684308	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4685405	0.87[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs4685410	0.86[ASN][1000 genomes]
rs4685411	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4685416	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4685419	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4685423	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4685424	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4685425	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4685426	0.82[JPT][hapmap]
rs58679681	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58750701	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58765457	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59737477	0.86[ASN][1000 genomes]
rs62246033	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62247183	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62247186	0.85[ASN][1000 genomes]
rs62247190	0.83[ASN][1000 genomes]
rs6796352	0.88[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6799397	0.80[ASN][1000 genomes]
rs6803135	0.84[ASN][1000 genomes]
rs6806862	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7612044	0.83[CHB][hapmap]
rs7617779	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7634374	0.83[ASN][1000 genomes]
rs7639882	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7648912	0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7653834	0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs964576	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9821630	0.95[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs9824172	0.83[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs9825009	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9844888	0.86[JPT][hapmap]
rs9853476	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9879150	0.83[CHB][hapmap];0.80[CHD][hapmap]
rs9880307	0.81[CHD][hapmap]
rs9883633	0.81[CHB][hapmap];0.85[JPT][hapmap]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:16978000-16991200	Weak transcription	Adipose Nuclei	Adipose
2	chr3:16984000-16992600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:16984200-17003400	Weak transcription	Spleen	Spleen
4	chr3:16985000-16992400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr3:16985000-17003400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:16985600-16992400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:16985600-17000400	Weak transcription	Primary T cells from cord blood	blood
8	chr3:16985800-16990800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr3:16986600-17000400	Weak transcription	Left Ventricle	heart
10	chr3:16986800-17003000	Weak transcription	Ovary	ovary
11	chr3:16987400-17005000	Weak transcription	Primary B cells from cord blood	blood
12	chr3:16987400-17015600	Weak transcription	Aorta	Aorta
13	chr3:16987600-16990800	Weak transcription	Fetal Heart	heart
14	chr3:16988000-16992600	Weak transcription	GM12878-XiMat	blood
15	chr3:16988000-16993600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr3:16988600-16991400	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr3:16989400-16993400	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr3:16989600-16992800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:16989600-16993400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:16989800-16991400	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr3:16990000-16993000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr3:16990600-16990800	Enhancers	Primary B cells from peripheral blood	blood
23	chr3:16990600-16990800	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr3:16990600-16990800	Enhancers	Psoas Muscle	Psoas
25	chr3:16990600-16990800	Enhancers	Sigmoid Colon	Sigmoid Colon

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