Variant report

Variant	rs7639882
Chromosome Location	chr3:16985272-16985273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:16977790..16979342-chr3:16983093..16986070,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11128812	0.87[ASN][1000 genomes]
rs11128813	0.95[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs11128814	0.82[ASN][1000 genomes]
rs11717433	0.87[ASN][1000 genomes]
rs11717649	0.83[ASN][1000 genomes]
rs11915356	0.97[ASN][1000 genomes]
rs12108065	0.91[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12233492	0.81[JPT][hapmap]
rs12488103	0.98[ASN][1000 genomes]
rs12491516	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12492983	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12494582	0.93[ASN][1000 genomes]
rs12495362	0.90[ASN][1000 genomes]
rs1372071	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17042909	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17042920	0.96[ASN][1000 genomes]
rs1806555	0.81[JPT][hapmap]
rs2014490	0.83[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs34322012	0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3796299	0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs3906814	0.84[JPT][hapmap];0.82[YRI][hapmap]
rs4131153	0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4289331	0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4334629	0.83[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap]
rs4383507	0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4402923	0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4416363	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4452313	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4577450	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4684305	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4684306	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4684307	0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4684308	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4685405	0.87[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs4685410	0.85[ASN][1000 genomes]
rs4685411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4685416	0.82[ASN][1000 genomes]
rs4685419	0.86[ASN][1000 genomes]
rs4685423	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4685424	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4685425	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4685426	0.82[JPT][hapmap]
rs58679681	0.87[ASN][1000 genomes]
rs58750701	0.97[ASN][1000 genomes]
rs58765457	0.95[ASN][1000 genomes]
rs59737477	0.85[ASN][1000 genomes]
rs62246033	0.90[ASN][1000 genomes]
rs62247183	0.83[ASN][1000 genomes]
rs62247186	0.83[ASN][1000 genomes]
rs62247190	0.82[ASN][1000 genomes]
rs6780191	0.85[YRI][hapmap]
rs6796352	0.88[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs6799397	0.80[ASN][1000 genomes]
rs6803135	0.83[ASN][1000 genomes]
rs6806862	0.88[ASN][1000 genomes]
rs7612044	0.83[CHB][hapmap]
rs7617779	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7634374	0.81[ASN][1000 genomes]
rs7648912	0.91[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.84[ASN][1000 genomes]
rs7653027	0.85[YRI][hapmap]
rs7653834	0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.85[ASN][1000 genomes]
rs964576	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9821630	0.95[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs9824172	0.83[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs9825009	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9844888	0.86[JPT][hapmap]
rs9853476	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9862613	0.95[YRI][hapmap]
rs9879150	0.83[CHB][hapmap]
rs9883633	0.81[CHB][hapmap];0.85[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7639882	CHCHD4	cis	parietal	SCAN

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:16959400-16986600	Weak transcription	Aorta	Aorta
2	chr3:16975600-16985800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:16977800-16987400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr3:16978000-16985800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr3:16978000-16991200	Weak transcription	Adipose Nuclei	Adipose
6	chr3:16979000-16990600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:16979400-16989800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr3:16980400-16985800	Weak transcription	GM12878-XiMat	blood
9	chr3:16981200-16985600	Enhancers	Primary T cells from cord blood	blood
10	chr3:16981400-16986000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr3:16983000-16988600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr3:16983200-16985400	Weak transcription	Ovary	ovary
13	chr3:16983200-16985800	Weak transcription	Fetal Intestine Large	intestine
14	chr3:16983200-16985800	Weak transcription	Fetal Intestine Small	intestine
15	chr3:16983400-16987600	Enhancers	Fetal Heart	heart
16	chr3:16983800-16986000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:16984000-16985800	Weak transcription	Right Atrium	heart
18	chr3:16984000-16985800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr3:16984000-16987200	Weak transcription	Right Ventricle	heart
20	chr3:16984000-16992600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr3:16984200-16985800	Weak transcription	Left Ventricle	heart
22	chr3:16984200-16986400	Weak transcription	Psoas Muscle	Psoas
23	chr3:16984200-17003400	Weak transcription	Spleen	Spleen
24	chr3:16984400-16985800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr3:16984400-16987400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr3:16984600-16986600	Weak transcription	Primary B cells from cord blood	blood
27	chr3:16984800-16985800	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr3:16984800-16986000	Enhancers	Stomach Mucosa	stomach
29	chr3:16984800-16986200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr3:16984800-16988000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr3:16985000-16985400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr3:16985000-16985600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:16985000-16985800	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr3:16985000-16986800	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr3:16985000-16987400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr3:16985000-16988200	Weak transcription	Primary hematopoietic stem cells	blood
37	chr3:16985000-16989000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:16985000-16989400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr3:16985000-16989600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr3:16985000-16992400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr3:16985000-17003400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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