Variant report

Variant	rs9862613
Chromosome Location	chr3:16983834-16983835
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:16977790..16979342-chr3:16983093..16986070,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10865746	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11128815	0.84[ASN][1000 genomes]
rs11717329	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11926952	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12233492	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12487288	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12497667	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12497953	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13058764	0.95[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13059347	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13071645	1.00[CEU][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13080108	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13080782	0.84[EUR][1000 genomes]
rs13317381	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1441035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1441039	0.80[ASN][1000 genomes]
rs17272796	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1806555	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1806556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1837697	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1837698	0.80[ASN][1000 genomes]
rs2014490	0.84[JPT][hapmap]
rs34149515	0.81[ASN][1000 genomes]
rs35319117	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3906814	0.95[CEU][hapmap];0.87[CHB][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3924971	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4234539	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4295151	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4334629	0.95[CEU][hapmap];0.89[JPT][hapmap]
rs4353792	0.91[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4423750	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4452313	0.87[YRI][hapmap]
rs4461404	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4472039	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4535211	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4561816	0.81[AMR][1000 genomes]
rs4596131	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4602367	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4618210	0.83[JPT][hapmap]
rs4685404	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4685405	0.84[JPT][hapmap]
rs4685408	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4685409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4685418	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4685420	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4685421	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4685426	0.84[JPT][hapmap]
rs55748719	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6442660	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6762816	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6776032	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6780191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6781611	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6783752	0.84[ASN][1000 genomes]
rs6797029	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6805534	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6807144	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6809087	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7610811	0.96[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes]
rs7611127	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7612044	0.96[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7617672	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7629171	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7629676	0.84[ASN][1000 genomes]
rs7639882	0.95[YRI][hapmap]
rs7645335	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7653027	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9810017	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9824172	0.84[JPT][hapmap]
rs9830460	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9841259	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9844888	0.90[CHB][hapmap]
rs9854760	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9879150	0.94[JPT][hapmap]
rs9880307	0.82[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9881521	0.90[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9883633	0.83[JPT][hapmap]
rs9985404	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:16959400-16986600	Weak transcription	Aorta	Aorta
2	chr3:16967000-16985000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr3:16973800-16985000	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr3:16974800-16984800	Weak transcription	Stomach Mucosa	stomach
5	chr3:16975600-16985000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:16975600-16985800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:16975800-16985000	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr3:16977800-16987400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr3:16978000-16985800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr3:16978000-16991200	Weak transcription	Adipose Nuclei	Adipose
11	chr3:16979000-16990600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:16979200-16984200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr3:16979400-16985000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:16979400-16989800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr3:16980000-16985000	Enhancers	Primary hematopoietic stem cells	blood
16	chr3:16980400-16985800	Weak transcription	GM12878-XiMat	blood
17	chr3:16981200-16985600	Enhancers	Primary T cells from cord blood	blood
18	chr3:16981400-16984000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr3:16981400-16984000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr3:16981400-16984200	Enhancers	Left Ventricle	heart
21	chr3:16981400-16984200	Enhancers	Psoas Muscle	Psoas
22	chr3:16981400-16986000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr3:16981600-16984000	Enhancers	Fetal Brain Male	brain
24	chr3:16981600-16984400	Enhancers	Primary T cells fromperipheralblood	blood
25	chr3:16981600-16985000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr3:16982400-16984000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:16982400-16984000	Enhancers	Right Ventricle	heart
28	chr3:16982400-16984400	Enhancers	Primary B cells from peripheral blood	blood
29	chr3:16982400-16984400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr3:16982400-16984800	Enhancers	Fetal Lung	lung
31	chr3:16982600-16984000	Weak transcription	Fetal Brain Female	brain
32	chr3:16982800-16984000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:16983000-16984400	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr3:16983000-16984800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr3:16983000-16988600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr3:16983200-16984800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:16983200-16985400	Weak transcription	Ovary	ovary
38	chr3:16983200-16985800	Weak transcription	Fetal Intestine Large	intestine
39	chr3:16983200-16985800	Weak transcription	Fetal Intestine Small	intestine
40	chr3:16983400-16987600	Enhancers	Fetal Heart	heart
41	chr3:16983600-16984600	Enhancers	Primary B cells from cord blood	blood
42	chr3:16983600-16985000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr3:16983600-16985000	Enhancers	Brain Angular Gyrus	brain
44	chr3:16983800-16984000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr3:16983800-16984000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr3:16983800-16984000	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr3:16983800-16984000	Enhancers	Pancreas	Pancrea
48	chr3:16983800-16984000	Enhancers	Right Atrium	heart
49	chr3:16983800-16984200	Enhancers	Gastric	stomach
50	chr3:16983800-16984200	Enhancers	Spleen	Spleen

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