Variant report

Variant	rs7610811
Chromosome Location	chr3:17099309-17099310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10865746	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11128815	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11717329	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11926952	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12233492	0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12487288	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12497667	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12497953	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13058764	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13059347	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13071645	0.89[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13080108	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13080782	0.83[EUR][1000 genomes]
rs13317381	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1441035	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17272796	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1806555	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs1806556	0.90[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1837697	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2014490	0.83[CHB][hapmap]
rs35319117	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3906814	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs3924971	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4234539	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4295151	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4334629	0.96[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4353792	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4423750	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4461404	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4472039	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4535211	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4561816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4596131	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4602367	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4618210	0.81[CEU][hapmap];0.95[JPT][hapmap]
rs4685404	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs4685408	0.86[AMR][1000 genomes]
rs4685409	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4685415	0.86[AMR][1000 genomes]
rs4685418	0.88[CEU][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4685420	1.00[CEU][hapmap];0.91[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4685421	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4685422	1.00[YRI][hapmap]
rs4685426	0.82[JPT][hapmap]
rs4685427	0.95[JPT][hapmap]
rs55748719	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6442660	0.88[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap]
rs6762816	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6776032	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6780191	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6781611	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6797029	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6805534	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6807144	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6809087	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7611127	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7612044	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7617672	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7629171	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7645335	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7653027	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9810017	0.90[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9824172	0.83[CHB][hapmap]
rs9830460	0.89[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes]
rs9841259	0.89[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs9854760	0.85[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9862613	0.96[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes]
rs9879150	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs9880307	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs9881521	0.91[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9883633	0.80[JPT][hapmap]
rs9985404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7610811	PLCL2	cis	Whole Blood	GTEx

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17081200-17111400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:17083000-17109600	Weak transcription	Fetal Intestine Large	intestine
3	chr3:17083200-17111600	Weak transcription	Stomach Mucosa	stomach
4	chr3:17085800-17112200	Weak transcription	Gastric	stomach
5	chr3:17089400-17109000	Weak transcription	Dnd41	blood
6	chr3:17089400-17135000	Weak transcription	Pancreas	Pancrea
7	chr3:17089600-17111000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:17089800-17110400	Weak transcription	Fetal Thymus	thymus
9	chr3:17089800-17112200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:17089800-17116000	Weak transcription	Thymus	Thymus
11	chr3:17090400-17110400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr3:17090600-17110400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:17091600-17103800	Strong transcription	Primary T cells from cord blood	blood
14	chr3:17092000-17109200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr3:17092200-17109000	Weak transcription	Liver	Liver
16	chr3:17094800-17101400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:17094800-17112200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:17095000-17112000	Weak transcription	Right Atrium	heart
19	chr3:17095200-17101800	Strong transcription	Primary B cells from cord blood	blood
20	chr3:17095200-17112200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr3:17095400-17106800	Weak transcription	Fetal Kidney	kidney
22	chr3:17095400-17108800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr3:17095400-17109000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr3:17095400-17109000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr3:17095400-17110200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr3:17095400-17114400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr3:17095400-17120600	Weak transcription	Aorta	Aorta
28	chr3:17095400-17120600	Weak transcription	Lung	lung
29	chr3:17095800-17099800	Enhancers	NHDF-Ad	bronchial
30	chr3:17095800-17111600	Weak transcription	Brain Germinal Matrix	brain
31	chr3:17096000-17100200	Enhancers	Fetal Heart	heart
32	chr3:17096200-17102000	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr3:17096400-17099400	Enhancers	Osteobl	bone
34	chr3:17096400-17102000	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr3:17096600-17099400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr3:17096600-17118000	Weak transcription	Fetal Intestine Small	intestine
37	chr3:17097000-17101600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr3:17097000-17109000	Weak transcription	Adipose Nuclei	Adipose
39	chr3:17097200-17108200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr3:17097200-17109200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr3:17097200-17112000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr3:17097200-17112000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr3:17097200-17113600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr3:17097400-17107000	Weak transcription	Psoas Muscle	Psoas
45	chr3:17097400-17109000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr3:17097600-17099400	Weak transcription	Left Ventricle	heart
47	chr3:17097600-17101400	Weak transcription	Ovary	ovary
48	chr3:17097600-17101400	Weak transcription	Right Ventricle	heart
49	chr3:17097600-17101400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr3:17097600-17103600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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