Variant report

Variant	rs4685408
Chromosome Location	chr3:16996035-16996036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10865746	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11128815	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11717329	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11926952	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12233492	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12487288	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12497667	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12497953	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13058764	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13059347	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13071645	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13080108	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13080782	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13317381	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1441035	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17272796	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1806555	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1806556	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1837697	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35319117	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3906814	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3924971	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4234539	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4295151	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4353792	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4423750	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4461404	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4472039	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4535211	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4561816	0.86[AMR][1000 genomes]
rs4596131	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4602367	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4685404	0.90[ASN][1000 genomes]
rs4685409	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4685418	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4685420	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4685421	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55748719	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6762816	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6776032	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6780191	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6781611	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6783752	0.84[ASN][1000 genomes]
rs6797029	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6805534	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6807144	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6809087	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7610811	0.86[AMR][1000 genomes]
rs7611127	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7612044	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7617672	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7629171	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7629676	0.84[ASN][1000 genomes]
rs7645335	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7653027	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9810017	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9830460	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9841259	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9854760	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9862613	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9880307	0.97[ASN][1000 genomes]
rs9881521	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9985404	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv980048	chr3:16995372-17016178	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:16984200-17003400	Weak transcription	Spleen	Spleen
2	chr3:16985000-17003400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:16985600-17000400	Weak transcription	Primary T cells from cord blood	blood
4	chr3:16986600-17000400	Weak transcription	Left Ventricle	heart
5	chr3:16986800-17003000	Weak transcription	Ovary	ovary
6	chr3:16987400-17005000	Weak transcription	Primary B cells from cord blood	blood
7	chr3:16987400-17015600	Weak transcription	Aorta	Aorta
8	chr3:16993400-16999600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr3:16993400-17003400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:16993400-17005200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:16993600-16999600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr3:16993800-17000200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr3:16993800-17002200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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