Variant report

Variant	rs4685418
Chromosome Location	chr3:17035078-17035079
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17028484..17030023-chr3:17033756..17036202,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10865746	0.87[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11128815	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11717329	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11926952	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12233492	0.81[CHB][hapmap];0.95[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12487288	0.91[CEU][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12497667	0.88[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12497953	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13058764	0.91[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13059347	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13071645	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13080108	0.87[CEU][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13080782	0.90[EUR][1000 genomes]
rs13317381	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1441035	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17272796	0.83[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1806555	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1806556	1.00[CEU][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1837697	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2014490	0.85[JPT][hapmap]
rs35319117	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3906814	0.95[CEU][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3924971	0.88[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4234539	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4295151	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4334629	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs4353792	0.83[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4423750	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4452313	0.96[YRI][hapmap]
rs4461404	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4472039	0.80[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4535211	0.83[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4561816	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4577450	0.80[JPT][hapmap]
rs4596131	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4602367	0.83[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4684308	0.85[JPT][hapmap]
rs4685404	0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4685405	0.81[JPT][hapmap]
rs4685408	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4685409	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4685415	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4685420	0.87[CEU][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4685421	0.88[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4685426	0.86[JPT][hapmap]
rs4685427	0.80[JPT][hapmap]
rs55748719	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6442660	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs6762816	0.87[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6776032	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6780191	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6781611	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6797029	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6805534	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6807144	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6809087	0.83[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7610811	0.88[CEU][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7611127	0.84[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7612044	0.88[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7617672	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7629171	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7645335	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7653027	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9810017	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821630	0.81[JPT][hapmap]
rs9824172	0.81[JPT][hapmap]
rs9830460	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9841259	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9844888	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs9854760	0.91[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9862613	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9879150	0.90[JPT][hapmap]
rs9880307	0.82[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9881521	0.90[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9883633	0.84[JPT][hapmap]
rs9985404	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963480	chr3:17031904-17038082	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17014800-17038800	Weak transcription	Primary B cells from cord blood	blood
2	chr3:17026800-17041200	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr3:17027200-17035400	Weak transcription	Fetal Brain Female	brain
4	chr3:17028400-17039600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr3:17029400-17042200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:17030000-17036200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr3:17030200-17035800	Weak transcription	Brain Anterior Caudate	brain
8	chr3:17030200-17039200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr3:17031200-17038200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:17031800-17041200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr3:17032600-17036400	Weak transcription	Fetal Intestine Small	intestine
12	chr3:17032600-17037600	Weak transcription	Lung	lung
13	chr3:17032800-17036400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:17032800-17036600	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr3:17033400-17036400	Weak transcription	Thymus	Thymus
16	chr3:17033400-17040200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr3:17033600-17036000	Genic enhancers	Primary T cells from cord blood	blood
18	chr3:17033600-17038200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr3:17033800-17035600	Enhancers	Fetal Heart	heart
20	chr3:17033800-17036200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:17033800-17037200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr3:17034000-17036200	Enhancers	Hela-S3	cervix
23	chr3:17034000-17038200	Enhancers	Stomach Mucosa	stomach
24	chr3:17034200-17035400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:17034200-17037800	Enhancers	Liver	Liver
26	chr3:17034400-17035600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:17034400-17036000	Weak transcription	Esophagus	oesophagus
28	chr3:17034400-17037600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr3:17034400-17044800	Weak transcription	Aorta	Aorta
30	chr3:17034600-17035400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr3:17034600-17035600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:17034600-17036200	Weak transcription	Spleen	Spleen
33	chr3:17034600-17037600	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr3:17034600-17037600	Enhancers	A549	lung
35	chr3:17034800-17036200	Weak transcription	Pancreas	Pancrea
36	chr3:17034800-17036200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr3:17034800-17036200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr3:17034800-17037600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr3:17034800-17039600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr3:17035000-17036000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr3:17035000-17036200	Weak transcription	Primary B cells from peripheral blood	blood
42	chr3:17035000-17036200	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr3:17035000-17036200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr3:17035000-17036200	Weak transcription	Gastric	stomach
45	chr3:17035000-17036200	Weak transcription	Left Ventricle	heart
46	chr3:17035000-17036200	Weak transcription	Psoas Muscle	Psoas
47	chr3:17035000-17036200	Weak transcription	Right Atrium	heart
48	chr3:17035000-17036200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr3:17035000-17036200	Weak transcription	Small Intestine	intestine
50	chr3:17035000-17036400	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links