Variant report

Variant	rs3906814
Chromosome Location	chr3:17011474-17011475
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10865746	0.86[CEU][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11128815	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11717329	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11926952	0.88[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12108065	0.84[JPT][hapmap]
rs12233492	0.84[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12487288	0.86[CEU][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12492983	0.84[JPT][hapmap]
rs12497667	0.88[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12497953	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13058764	0.86[CEU][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13059347	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13071645	0.95[CEU][hapmap];0.86[YRI][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13080108	0.91[CEU][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13080782	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13317381	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1372071	0.84[JPT][hapmap]
rs1441035	0.95[CEU][hapmap];0.84[JPT][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17042909	0.84[JPT][hapmap]
rs17272796	0.82[CEU][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1806555	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1806556	0.96[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1837697	0.98[AFR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34322012	0.84[JPT][hapmap]
rs35319117	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3796299	0.84[JPT][hapmap]
rs3924971	0.92[CEU][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4131153	0.84[JPT][hapmap]
rs4234539	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4289331	0.84[JPT][hapmap]
rs4295151	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4334629	0.83[CEU][hapmap]
rs4353792	0.83[CEU][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4383507	0.84[JPT][hapmap]
rs4402923	0.84[JPT][hapmap]
rs4423750	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4452313	0.86[JPT][hapmap];0.87[YRI][hapmap]
rs4461404	0.95[CEU][hapmap];0.84[JPT][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4472039	0.83[CEU][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4535211	0.82[CEU][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4561816	0.88[EUR][1000 genomes]
rs4577450	0.85[JPT][hapmap]
rs4596131	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4602367	0.83[CEU][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4684305	0.84[JPT][hapmap]
rs4684306	0.84[JPT][hapmap]
rs4684307	0.84[JPT][hapmap]
rs4684308	0.94[JPT][hapmap]
rs4685404	0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs4685408	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4685409	0.95[CEU][hapmap];0.84[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4685411	0.85[JPT][hapmap]
rs4685418	0.95[CEU][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4685420	0.87[CEU][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4685421	0.88[CEU][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4685423	0.84[JPT][hapmap]
rs4685424	0.84[JPT][hapmap]
rs4685425	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs55748719	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6442660	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs6762816	0.87[CEU][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6776032	0.81[ASN][1000 genomes]
rs6780191	0.95[CEU][hapmap];0.84[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6781611	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6796352	0.80[JPT][hapmap]
rs6797029	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6805534	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6807144	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6809087	0.82[CEU][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7610811	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs7611127	0.84[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7612044	0.88[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7617672	0.87[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7617779	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs7629171	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7639882	0.84[JPT][hapmap];0.82[YRI][hapmap]
rs7645335	0.96[CEU][hapmap];0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7648912	0.84[JPT][hapmap]
rs7653027	0.95[CEU][hapmap];0.84[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7653834	0.84[JPT][hapmap]
rs964576	0.83[CHB][hapmap]
rs9810017	0.96[CEU][hapmap];0.85[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9821630	0.89[JPT][hapmap]
rs9825009	0.84[JPT][hapmap]
rs9830460	0.95[CEU][hapmap];0.84[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9841259	0.95[CEU][hapmap];0.84[CHB][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9844888	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9853476	0.84[JPT][hapmap]
rs9854760	0.96[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9862613	0.95[CEU][hapmap];0.87[CHB][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9880307	0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs9881521	0.89[CHB][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9985404	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv980048	chr3:16995372-17016178	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:16987400-17015600	Weak transcription	Aorta	Aorta
2	chr3:17005400-17015000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:17009200-17026600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr3:17009800-17015000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:17010400-17015600	Weak transcription	Right Ventricle	heart
6	chr3:17011000-17015000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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