Variant report

Variant	rs9881521
Chromosome Location	chr3:17029455-17029456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17029033..17031538-chr3:17037061..17039270,2	MCF-7	breast:
2	chr3:17028484..17030023-chr3:17033756..17036202,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10865746	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11128815	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11717329	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11926952	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12233492	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12487288	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12497667	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12497953	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13058764	0.94[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13059347	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13071645	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080108	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13080782	0.90[EUR][1000 genomes]
rs13317381	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1441035	0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17272796	0.91[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1806555	0.81[CHB][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1806556	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1837697	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2014490	0.81[JPT][hapmap]
rs35319117	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3906814	0.89[CHB][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3924971	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4234539	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4295151	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4334629	0.85[JPT][hapmap]
rs4353792	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4423750	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4461404	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4472039	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4535211	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4561816	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4596131	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4602367	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4685404	0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4685405	0.81[JPT][hapmap]
rs4685408	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4685409	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4685415	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4685418	0.90[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4685420	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4685421	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4685426	0.86[JPT][hapmap]
rs4685427	0.80[JPT][hapmap]
rs55748719	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6442660	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6762816	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6776032	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6780191	0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6781611	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6797029	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6805534	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6807144	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6809087	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7610811	0.91[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7611127	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7612044	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7617672	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7629171	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7645335	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7653027	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs964576	0.81[CHB][hapmap]
rs9810017	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9824172	0.81[JPT][hapmap]
rs9830460	0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9841259	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9844888	0.91[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs9854760	0.85[CHB][hapmap];0.94[JPT][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9862613	0.90[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9879150	0.90[JPT][hapmap]
rs9880307	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs9883633	0.84[JPT][hapmap]
rs9985404	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9881521	PLCL2	cis	Whole Blood	GTEx

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17014800-17033600	Weak transcription	Primary T cells from cord blood	blood
2	chr3:17014800-17038800	Weak transcription	Primary B cells from cord blood	blood
3	chr3:17016400-17032200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr3:17017000-17029800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr3:17019000-17029800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:17020400-17034000	Weak transcription	Small Intestine	intestine
7	chr3:17024000-17029600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr3:17024200-17034200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr3:17024800-17033400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:17025400-17033800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:17026800-17041200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr3:17027200-17033800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr3:17027200-17033800	Weak transcription	Fetal Heart	heart
14	chr3:17027200-17035400	Weak transcription	Fetal Brain Female	brain
15	chr3:17027400-17032800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr3:17027600-17029800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr3:17027600-17032400	Weak transcription	Right Ventricle	heart
18	chr3:17027600-17033800	Weak transcription	Gastric	stomach
19	chr3:17027600-17034000	Weak transcription	Right Atrium	heart
20	chr3:17027800-17034400	Weak transcription	Ovary	ovary
21	chr3:17028000-17031800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr3:17028400-17039600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr3:17028800-17029600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr3:17028800-17029800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr3:17028800-17031800	Weak transcription	Pancreas	Pancrea
26	chr3:17028800-17031800	Weak transcription	Psoas Muscle	Psoas
27	chr3:17029000-17030000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr3:17029000-17032400	Weak transcription	Left Ventricle	heart
29	chr3:17029000-17033800	Weak transcription	Spleen	Spleen
30	chr3:17029000-17034000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr3:17029000-17034400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr3:17029200-17030600	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr3:17029200-17034400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr3:17029400-17034200	Weak transcription	Liver	Liver
35	chr3:17029400-17042200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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