Variant report

Variant	rs4685425
Chromosome Location	chr3:17118910-17118911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17110502..17112768-chr3:17117008..17119386,2	K562	blood:
2	chr3:17118420..17120285-chr3:17121140..17122882,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11128813	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11128814	0.89[ASN][1000 genomes]
rs11717433	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11717649	0.90[ASN][1000 genomes]
rs11721224	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12108065	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12233492	0.81[JPT][hapmap]
rs12488103	0.81[AMR][1000 genomes]
rs12491516	0.89[ASN][1000 genomes]
rs12492983	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12494582	0.81[AMR][1000 genomes]
rs12495362	0.81[ASN][1000 genomes]
rs1372071	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17042909	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1806555	0.81[JPT][hapmap]
rs2014490	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs34322012	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3796299	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3906814	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs4131153	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4289331	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4334629	0.82[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs4383507	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4402923	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4416363	0.83[ASN][1000 genomes]
rs4452313	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4577450	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4684305	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs4684306	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs4684307	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4684308	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4685405	0.86[JPT][hapmap]
rs4685411	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4685419	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4685422	0.89[ASN][1000 genomes]
rs4685423	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4685424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4685426	0.87[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs58679681	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62246033	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62247183	0.90[ASN][1000 genomes]
rs62247186	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62247190	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62247256	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247258	0.83[ASN][1000 genomes]
rs62248160	0.83[ASN][1000 genomes]
rs62248161	0.83[ASN][1000 genomes]
rs6775709	0.81[ASN][1000 genomes]
rs6777357	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796352	0.89[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6803135	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6806862	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7612044	0.86[CHB][hapmap]
rs7617779	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7634374	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7639882	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7648912	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7653834	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs964576	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs9821630	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9824172	0.80[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs9825009	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9844888	0.87[JPT][hapmap]
rs9853476	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs9879150	0.82[CHB][hapmap]
rs9883633	0.81[CHB][hapmap];0.85[JPT][hapmap]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17089400-17135000	Weak transcription	Pancreas	Pancrea
2	chr3:17095400-17120600	Weak transcription	Aorta	Aorta
3	chr3:17095400-17120600	Weak transcription	Lung	lung
4	chr3:17097600-17120400	Weak transcription	Spleen	Spleen
5	chr3:17103400-17134400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr3:17107000-17133400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:17107200-17126200	Weak transcription	Fetal Kidney	kidney
8	chr3:17107600-17122800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:17108200-17120600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr3:17109800-17120800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:17110800-17132200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:17111400-17129400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:17111800-17130600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:17112000-17132000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr3:17112200-17137400	Weak transcription	Brain Germinal Matrix	brain
16	chr3:17112600-17120600	Weak transcription	Gastric	stomach
17	chr3:17112600-17120600	Weak transcription	Ovary	ovary
18	chr3:17112600-17120800	Weak transcription	Adipose Nuclei	Adipose
19	chr3:17112600-17123000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:17112600-17124000	Weak transcription	Fetal Intestine Large	intestine
21	chr3:17112600-17124600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr3:17112600-17126000	Weak transcription	Fetal Brain Female	brain
23	chr3:17112600-17127800	Weak transcription	Fetal Lung	lung
24	chr3:17112600-17129600	Weak transcription	Brain Angular Gyrus	brain
25	chr3:17112600-17130200	Weak transcription	Brain Anterior Caudate	brain
26	chr3:17112600-17135800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr3:17112800-17119600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:17112800-17119800	Weak transcription	Fetal Stomach	stomach
29	chr3:17112800-17131200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr3:17112800-17135200	Weak transcription	Fetal Brain Male	brain
31	chr3:17114400-17126800	Strong transcription	Primary B cells from cord blood	blood
32	chr3:17114400-17131600	Weak transcription	Colonic Mucosa	Colon
33	chr3:17116000-17119600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr3:17116000-17121200	Strong transcription	Placenta	Placenta
35	chr3:17116200-17120800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr3:17116400-17119200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr3:17116400-17122200	Weak transcription	Primary hematopoietic stem cells	blood
38	chr3:17116400-17122400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr3:17116400-17122800	Weak transcription	Fetal Thymus	thymus
40	chr3:17116600-17120000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr3:17116600-17122800	Strong transcription	Primary T cells from cord blood	blood
42	chr3:17116800-17119200	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr3:17116800-17126000	Weak transcription	Dnd41	blood
44	chr3:17116800-17130200	Weak transcription	Thymus	Thymus
45	chr3:17117400-17125000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr3:17117400-17127600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr3:17117600-17120600	Weak transcription	Liver	Liver
48	chr3:17117800-17119200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:17117800-17122600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr3:17117800-17127600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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