Variant report

Variant	rs62248161
Chromosome Location	chr3:17126696-17126697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10865748	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11721224	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3796299	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4685423	0.83[ASN][1000 genomes]
rs4685424	0.83[ASN][1000 genomes]
rs4685425	0.83[ASN][1000 genomes]
rs4685431	0.82[ASN][1000 genomes]
rs55641789	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58238441	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62247256	0.83[ASN][1000 genomes]
rs62247258	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62248160	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62248162	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62248170	0.87[ASN][1000 genomes]
rs6777357	0.83[ASN][1000 genomes]
rs6808782	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv819815	chr3:17124088-17131754	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	n/a

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17089400-17135000	Weak transcription	Pancreas	Pancrea
2	chr3:17103400-17134400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr3:17107000-17133400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:17110800-17132200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:17111400-17129400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:17111800-17130600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:17112000-17132000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr3:17112200-17137400	Weak transcription	Brain Germinal Matrix	brain
9	chr3:17112600-17127800	Weak transcription	Fetal Lung	lung
10	chr3:17112600-17129600	Weak transcription	Brain Angular Gyrus	brain
11	chr3:17112600-17130200	Weak transcription	Brain Anterior Caudate	brain
12	chr3:17112600-17135800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:17112800-17131200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:17112800-17135200	Weak transcription	Fetal Brain Male	brain
15	chr3:17114400-17126800	Strong transcription	Primary B cells from cord blood	blood
16	chr3:17114400-17131600	Weak transcription	Colonic Mucosa	Colon
17	chr3:17116800-17130200	Weak transcription	Thymus	Thymus
18	chr3:17117400-17127600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:17117800-17127600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr3:17117800-17128000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr3:17118400-17126800	Strong transcription	Primary B cells from peripheral blood	blood
22	chr3:17118600-17126800	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr3:17119200-17126800	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr3:17120400-17133400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr3:17120400-17135000	Weak transcription	HUVEC	blood vessel
26	chr3:17121000-17129600	Weak transcription	Right Ventricle	heart
27	chr3:17121000-17134400	Weak transcription	Gastric	stomach
28	chr3:17121600-17127800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr3:17121600-17132200	Weak transcription	Fetal Stomach	stomach
30	chr3:17121800-17129000	Weak transcription	Aorta	Aorta
31	chr3:17122800-17128000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr3:17122800-17128200	Weak transcription	Fetal Heart	heart
33	chr3:17122800-17131200	Weak transcription	Spleen	Spleen
34	chr3:17122800-17136000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:17123000-17129000	Weak transcription	Psoas Muscle	Psoas
36	chr3:17123000-17130000	Weak transcription	Adipose Nuclei	Adipose
37	chr3:17123000-17130200	Weak transcription	Placenta	Placenta
38	chr3:17123000-17130600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr3:17123000-17131200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr3:17123200-17130200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr3:17123200-17132200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr3:17123400-17129600	Weak transcription	Fetal Muscle Trunk	muscle
43	chr3:17124200-17129000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr3:17124400-17126800	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr3:17124600-17131200	Weak transcription	Fetal Intestine Large	intestine
46	chr3:17124800-17126800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:17124800-17129600	Weak transcription	Lung	lung
48	chr3:17125000-17127600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr3:17125000-17128800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr3:17125000-17129000	Weak transcription	Left Ventricle	heart

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