Variant report

Variant	rs58238441
Chromosome Location	chr3:17137090-17137091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10865747	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10865748	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4685431	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs55641789	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62247258	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62248160	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62248161	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62248162	0.85[EUR][1000 genomes]
rs62248169	0.86[ASN][1000 genomes]
rs62248170	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6808782	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17112200-17137400	Weak transcription	Brain Germinal Matrix	brain
2	chr3:17129000-17141400	Weak transcription	Fetal Brain Female	brain
3	chr3:17130400-17143400	Weak transcription	Thymus	Thymus
4	chr3:17131200-17143800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:17133600-17142600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:17133800-17137400	Weak transcription	Primary B cells from cord blood	blood
7	chr3:17133800-17137400	Weak transcription	Primary T cells from cord blood	blood
8	chr3:17134000-17142600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr3:17134200-17142800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr3:17135000-17137200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:17135600-17137200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr3:17135600-17137200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr3:17137000-17137200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:17137000-17137600	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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