Variant report

Variant	rs4685431
Chromosome Location	chr3:17141588-17141589
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10865747	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10865748	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs55641789	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58238441	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62247258	0.82[ASN][1000 genomes]
rs62248160	0.82[ASN][1000 genomes]
rs62248161	0.82[ASN][1000 genomes]
rs62248169	0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62248170	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6808782	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17130400-17143400	Weak transcription	Thymus	Thymus
2	chr3:17131200-17143800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:17133600-17142600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:17134000-17142600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr3:17134200-17142800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr3:17141400-17142400	ZNF genes & repeats	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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