Variant report

Variant	rs12494582
Chromosome Location	chr3:17008230-17008231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11128812	0.84[ASN][1000 genomes]
rs11128813	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11128814	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11717433	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11717649	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11721224	0.84[AMR][1000 genomes]
rs11915356	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12488103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12492983	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12495362	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1372071	0.91[ASN][1000 genomes]
rs17042909	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17042920	0.91[ASN][1000 genomes]
rs34322012	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3796299	0.81[AMR][1000 genomes]
rs4131153	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4289331	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4383507	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4402923	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4416363	0.84[ASN][1000 genomes]
rs4452313	0.80[ASN][1000 genomes]
rs4577450	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4684305	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4684306	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4684307	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4684308	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4685405	0.83[ASN][1000 genomes]
rs4685410	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4685411	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4685419	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4685424	0.81[AMR][1000 genomes]
rs4685425	0.81[AMR][1000 genomes]
rs58679681	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58750701	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58765457	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs59737477	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62246033	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62247183	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62247186	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62247188	0.82[AMR][1000 genomes]
rs62247190	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6796352	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6803135	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6806862	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7617779	0.82[ASN][1000 genomes]
rs7634374	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7639882	0.93[ASN][1000 genomes]
rs7653834	0.81[ASN][1000 genomes]
rs964576	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9821630	0.82[ASN][1000 genomes]
rs9824172	0.82[ASN][1000 genomes]
rs9825009	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9853476	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv980048	chr3:16995372-17016178	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:16987400-17015600	Weak transcription	Aorta	Aorta
2	chr3:17000600-17008400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:17001400-17008400	Weak transcription	Primary T cells from cord blood	blood
4	chr3:17003600-17010200	Weak transcription	Right Ventricle	heart
5	chr3:17005400-17015000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:17006400-17008400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:17008200-17009000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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