Variant report

Variant	rs62246033
Chromosome Location	chr3:17020023-17020024
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:16999677..17001737-chr3:17018977..17021137,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11128812	0.83[ASN][1000 genomes]
rs11128813	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11128814	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11717433	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11717649	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11721224	0.84[AMR][1000 genomes]
rs11915356	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12108065	0.88[ASN][1000 genomes]
rs12488103	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12491516	0.88[ASN][1000 genomes]
rs12492983	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12494582	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12495362	0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1372071	0.87[ASN][1000 genomes]
rs17042909	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17042920	0.87[ASN][1000 genomes]
rs34322012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3796299	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4131153	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4289331	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4383507	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4402923	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4416363	0.95[ASN][1000 genomes]
rs4452313	0.90[ASN][1000 genomes]
rs4577450	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4684305	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4684306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4684307	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4684308	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4685410	0.87[AMR][1000 genomes]
rs4685411	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4685419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4685423	0.81[ASN][1000 genomes]
rs4685424	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4685425	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58679681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58750701	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58765457	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59737477	0.89[AMR][1000 genomes]
rs62247183	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62247186	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62247188	0.82[AMR][1000 genomes]
rs62247190	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62247256	0.81[ASN][1000 genomes]
rs6777357	0.81[ASN][1000 genomes]
rs6796352	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6803135	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6806862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7617779	0.92[ASN][1000 genomes]
rs7634374	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7639882	0.90[ASN][1000 genomes]
rs7648912	0.87[ASN][1000 genomes]
rs7653834	0.92[ASN][1000 genomes]
rs964576	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9821630	0.88[ASN][1000 genomes]
rs9825009	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9853476	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9879150	0.80[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17009200-17026600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:17014800-17033600	Weak transcription	Primary T cells from cord blood	blood
3	chr3:17014800-17038800	Weak transcription	Primary B cells from cord blood	blood
4	chr3:17016000-17020600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:17016200-17027200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:17016400-17032200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr3:17016600-17026600	Weak transcription	Fetal Heart	heart
8	chr3:17017000-17028600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:17017000-17029800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:17017400-17023200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:17017400-17026600	Weak transcription	Right Ventricle	heart
12	chr3:17017400-17027200	Weak transcription	Ovary	ovary
13	chr3:17017400-17027400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr3:17017400-17027400	Weak transcription	Right Atrium	heart
15	chr3:17017600-17021400	Weak transcription	Left Ventricle	heart
16	chr3:17017600-17022000	Weak transcription	Lung	lung
17	chr3:17017600-17023200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr3:17018000-17023200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:17018400-17021600	Weak transcription	Dnd41	blood
20	chr3:17018800-17020200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:17019000-17029800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:17019200-17020400	Enhancers	Psoas Muscle	Psoas
23	chr3:17019200-17020400	Enhancers	Osteobl	bone
24	chr3:17019400-17020200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:17019400-17023200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr3:17019400-17027200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr3:17019600-17020200	Enhancers	Hela-S3	cervix
28	chr3:17019600-17020400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:17019600-17020600	Enhancers	Liver	Liver
30	chr3:17019600-17022800	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr3:17019800-17020400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr3:17019800-17020600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:17020000-17020200	Enhancers	Aorta	Aorta
34	chr3:17020000-17020200	Enhancers	Pancreas	Pancrea
35	chr3:17020000-17020400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr3:17020000-17020400	Enhancers	Small Intestine	intestine
37	chr3:17020000-17020400	Enhancers	NH-A	brain
38	chr3:17020000-17020600	Enhancers	Adipose Nuclei	Adipose

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