Variant report

Variant	rs34168776
Chromosome Location	chr11:16550508-16550509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs12786352	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12786367	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12786641	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12787015	0.82[AMR][1000 genomes]
rs12787119	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12791781	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793714	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793829	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12794768	0.86[ASN][1000 genomes]
rs12796372	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12796718	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12798430	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12799243	0.82[EUR][1000 genomes]
rs12800576	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12802250	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12804277	0.81[ASN][1000 genomes]
rs12808748	0.86[ASN][1000 genomes]
rs34097789	0.86[ASN][1000 genomes]
rs34156428	0.82[ASN][1000 genomes]
rs34221263	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34241215	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34310036	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34391086	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34506786	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34793179	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34812104	0.86[ASN][1000 genomes]
rs34854785	0.82[ASN][1000 genomes]
rs35199438	0.86[ASN][1000 genomes]
rs35301664	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35305792	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35359042	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35384953	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35486927	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35563581	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35670829	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35708656	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35843825	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35885398	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35911416	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35925952	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36141792	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36167657	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4130469	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4132854	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4396254	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5001406	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57897281	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57998337	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60084903	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60406205	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66601782	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66670205	0.86[ASN][1000 genomes]
rs67445592	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs67891751	0.82[ASN][1000 genomes]
rs7101556	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7109165	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72873324	0.81[ASN][1000 genomes]
rs73433598	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7927277	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7939925	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7945007	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7950287	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7951786	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1035768	chr11:16530440-16578566	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16544600-16558200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:16548400-16552400	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr11:16548600-16552400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr11:16549200-16552000	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr11:16549400-16551000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:16549400-16556200	Weak transcription	Left Ventricle	heart
7	chr11:16549600-16550600	Enhancers	Psoas Muscle	Psoas
8	chr11:16550000-16550600	Enhancers	Adipose Nuclei	Adipose
9	chr11:16550000-16550600	Enhancers	Fetal Heart	heart
10	chr11:16550000-16551400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:16550200-16550600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:16550400-16551000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:16550400-16551000	Enhancers	Fetal Muscle Leg	muscle

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