Variant report

Variant	rs57897281
Chromosome Location	chr11:16545002-16545003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs12786352	0.89[AMR][1000 genomes]
rs12786367	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12786641	0.82[AMR][1000 genomes]
rs12787015	0.82[AMR][1000 genomes]
rs12787119	0.82[AMR][1000 genomes]
rs12791781	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12793714	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12793829	0.82[AMR][1000 genomes]
rs12794768	0.81[ASN][1000 genomes]
rs12796372	0.80[AMR][1000 genomes]
rs12796718	0.82[AMR][1000 genomes]
rs12798430	0.80[AMR][1000 genomes]
rs12800576	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12802250	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12808748	0.80[ASN][1000 genomes]
rs34097789	0.81[ASN][1000 genomes]
rs34168776	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34221263	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34241215	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34310036	0.82[AMR][1000 genomes]
rs34391086	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34506786	0.82[ASN][1000 genomes]
rs34793179	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34812104	0.81[ASN][1000 genomes]
rs35199438	0.81[ASN][1000 genomes]
rs35301664	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35305792	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35359042	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35384953	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35486927	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35563581	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35670829	0.82[AMR][1000 genomes]
rs35708656	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35843825	0.82[AMR][1000 genomes]
rs35885398	0.82[AMR][1000 genomes]
rs35911416	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35925952	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36141792	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36167657	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4130469	0.82[AMR][1000 genomes]
rs4132854	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4396254	0.82[AMR][1000 genomes]
rs5001406	0.82[AMR][1000 genomes]
rs57998337	0.82[AMR][1000 genomes]
rs60084903	0.82[AMR][1000 genomes]
rs60406205	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66601782	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66670205	0.81[ASN][1000 genomes]
rs67445592	0.82[AMR][1000 genomes]
rs7101556	0.82[AMR][1000 genomes]
rs7109165	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73433598	0.80[AMR][1000 genomes]
rs7927277	0.82[AMR][1000 genomes]
rs7939925	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7945007	0.82[AMR][1000 genomes]
rs7950287	0.82[AMR][1000 genomes]
rs7951786	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1035768	chr11:16530440-16578566	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16542800-16548800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16544600-16558200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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