Variant report

Variant	rs34812104
Chromosome Location	chr11:16614554-16614555
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16612673..16614761-chr11:16619042..16621454,3	K562	blood:
2	chr11:16608501..16610129-chr11:16613605..16615410,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10734249	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10741708	0.85[EUR][1000 genomes]
rs12791781	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12793714	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12794768	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12799800	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12799969	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12800576	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12804277	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1501451	0.93[EUR][1000 genomes]
rs1846936	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1967192	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1995343	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2221243	0.81[EUR][1000 genomes]
rs34097789	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34168776	0.86[ASN][1000 genomes]
rs34241215	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34391086	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34793179	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35199438	1.00[ASN][1000 genomes]
rs35359042	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35384953	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35563581	0.82[ASN][1000 genomes]
rs35925952	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36141792	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3802963	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3921675	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4756860	0.84[EUR][1000 genomes]
rs4756862	0.93[EUR][1000 genomes]
rs4757428	0.81[EUR][1000 genomes]
rs57897281	0.81[ASN][1000 genomes]
rs60406205	0.80[ASN][1000 genomes]
rs6486310	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6486312	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs66601782	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66670205	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110136	0.85[EUR][1000 genomes]
rs7117140	0.93[EUR][1000 genomes]
rs7125262	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7128484	0.94[EUR][1000 genomes]
rs7939889	0.86[EUR][1000 genomes]
rs7944906	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16608000-16621600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr11:16608800-16617200	Weak transcription	Brain Germinal Matrix	brain
3	chr11:16610200-16617200	Weak transcription	K562	blood
4	chr11:16610400-16617000	Weak transcription	Psoas Muscle	Psoas
5	chr11:16610400-16617800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:16610400-16623800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:16612200-16615400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:16614200-16616000	Enhancers	Fetal Heart	heart
9	chr11:16614400-16614800	Enhancers	Pancreatic Islets	Pancreatic Islet

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