Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16691570..16693601-chr11:16731632..16734150,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10734249	0.92[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs10741708	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs12786367	0.85[CEU][hapmap]
rs12794768	0.94[EUR][1000 genomes]
rs12799800	0.98[EUR][1000 genomes]
rs12799969	0.97[EUR][1000 genomes]
rs12804277	0.94[EUR][1000 genomes]
rs1501451	0.95[EUR][1000 genomes]
rs1846936	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1967192	0.98[EUR][1000 genomes]
rs1995343	0.93[EUR][1000 genomes]
rs2221243	0.85[EUR][1000 genomes]
rs34097789	0.94[EUR][1000 genomes]
rs34812104	0.94[EUR][1000 genomes]
rs3802963	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs3921675	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4396254	0.85[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs4756860	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4756862	0.95[EUR][1000 genomes]
rs4757428	0.83[EUR][1000 genomes]
rs4757431	0.93[GIH][hapmap];0.81[JPT][hapmap];0.86[TSI][hapmap]
rs4757432	0.81[EUR][1000 genomes]
rs6486310	0.89[EUR][1000 genomes]
rs6486312	0.95[EUR][1000 genomes]
rs66670205	0.87[EUR][1000 genomes]
rs7110136	0.92[CEU][hapmap];0.86[GIH][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs7117140	0.95[EUR][1000 genomes]
rs7125008	0.82[EUR][1000 genomes]
rs7125262	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7939889	0.89[EUR][1000 genomes]
rs7944906	0.93[EUR][1000 genomes]
rs7945007	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3396970	chr11:16658425-16715569	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7128484	TSG101	cis	cerebellum	SCAN
rs7128484	C11orf58	cis	cerebellum	SCAN
rs7128484	SLC6A5	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16692200-16700200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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