Variant report

Variant	rs1501451
Chromosome Location	chr11:16725961-16725962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16721602..16723592-chr11:16724608..16727381,2	K562	blood:
2	chr11:16724664..16727210-chr11:16758436..16761240,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction
ENSG00000110696	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10734249	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10741708	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12794768	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12799800	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12799969	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12804277	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1846936	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1967192	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1995343	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2221243	0.88[EUR][1000 genomes]
rs34097789	0.93[EUR][1000 genomes]
rs34812104	0.93[EUR][1000 genomes]
rs3802963	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3921675	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4756860	0.86[EUR][1000 genomes]
rs4756862	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4757428	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4757432	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6486310	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6486312	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66670205	0.85[EUR][1000 genomes]
rs7110136	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7117140	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7125008	0.84[EUR][1000 genomes]
rs7125262	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7128484	0.95[EUR][1000 genomes]
rs7931915	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7939889	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7944906	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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