Variant report
| Variant | rs6486310 |
|---|---|
| Chromosome Location | chr11:16685742-16685743 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10734249 | 0.80[EUR][1000 genomes] |
| rs10741708 | 0.83[ASN][1000 genomes] |
| rs12794768 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12799800 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12799969 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12804277 | 0.89[EUR][1000 genomes] |
| rs1501451 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1846936 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1967192 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1995343 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs34097789 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs34812104 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs35199438 | 0.83[ASN][1000 genomes] |
| rs3802963 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3921675 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4756862 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4757428 | 0.83[ASN][1000 genomes] |
| rs6486312 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs66670205 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7117140 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7125262 | 0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7128484 | 0.89[EUR][1000 genomes] |
| rs7939889 | 0.80[EUR][1000 genomes] |
| rs7944906 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv553566 | chr11:16329009-16799044 | Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv897016 | chr11:16455794-16691743 | Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv832076 | chr11:16650873-16691808 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv3396970 | chr11:16658425-16715569 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:16683800-16686200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
