Variant report

Variant	rs3921675
Chromosome Location	chr11:16673384-16673385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10734249	0.90[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs10741708	0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12786367	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12794768	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12799800	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12799969	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800576	0.82[ASN][1000 genomes]
rs12804277	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1501451	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1846936	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs1967192	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1995343	0.92[EUR][1000 genomes]
rs2221243	0.83[EUR][1000 genomes]
rs34097789	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34391086	0.82[ASN][1000 genomes]
rs34812104	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35199438	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs35384953	0.82[ASN][1000 genomes]
rs35925952	0.82[ASN][1000 genomes]
rs3802963	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs4396254	0.91[CEU][hapmap]
rs4756860	0.88[EUR][1000 genomes]
rs4756862	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4757428	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6486310	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6486312	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66670205	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7110136	0.90[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs7117140	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7125008	0.81[EUR][1000 genomes]
rs7125262	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7128484	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7939889	0.87[EUR][1000 genomes]
rs7944906	0.92[EUR][1000 genomes]
rs7945007	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs7950287	1.00[CEU][hapmap];0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832076	chr11:16650873-16691808	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3396970	chr11:16658425-16715569	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16669800-16680800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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