Variant report
| Variant | rs2221243 |
|---|---|
| Chromosome Location | chr11:16751488-16751489 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10734249 | 0.85[EUR][1000 genomes] |
| rs10741708 | 0.83[EUR][1000 genomes] |
| rs12794768 | 0.81[EUR][1000 genomes] |
| rs12799800 | 0.84[EUR][1000 genomes] |
| rs12799969 | 0.83[EUR][1000 genomes] |
| rs12804277 | 0.81[EUR][1000 genomes] |
| rs1501451 | 0.88[EUR][1000 genomes] |
| rs1846936 | 0.89[EUR][1000 genomes] |
| rs1967192 | 0.84[EUR][1000 genomes] |
| rs1995343 | 0.89[EUR][1000 genomes] |
| rs34097789 | 0.81[EUR][1000 genomes] |
| rs34812104 | 0.81[EUR][1000 genomes] |
| rs3802963 | 0.89[EUR][1000 genomes] |
| rs3921675 | 0.83[EUR][1000 genomes] |
| rs4756862 | 0.88[EUR][1000 genomes] |
| rs6486312 | 0.88[EUR][1000 genomes] |
| rs7110136 | 0.83[EUR][1000 genomes] |
| rs7117140 | 0.88[EUR][1000 genomes] |
| rs7125262 | 0.85[EUR][1000 genomes] |
| rs7128484 | 0.85[EUR][1000 genomes] |
| rs7939889 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7944906 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv553566 | chr11:16329009-16799044 | Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:16748200-16759400 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
