Variant report

Variant	rs12799800
Chromosome Location	chr11:16674146-16674147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10734249	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10741708	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12794768	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12799969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800576	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12804277	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1501451	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1846936	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1967192	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1995343	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2221243	0.84[EUR][1000 genomes]
rs34097789	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34391086	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34812104	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35199438	0.88[ASN][1000 genomes]
rs35384953	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35925952	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3802963	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs3921675	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756860	0.87[EUR][1000 genomes]
rs4756862	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4757428	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4757432	0.82[EUR][1000 genomes]
rs6486310	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6486312	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66670205	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7110136	0.88[EUR][1000 genomes]
rs7117140	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7125008	0.80[EUR][1000 genomes]
rs7125262	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7128484	0.98[EUR][1000 genomes]
rs7939889	0.89[EUR][1000 genomes]
rs7944906	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832076	chr11:16650873-16691808	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3396970	chr11:16658425-16715569	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16669800-16680800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:16673800-16674200	Active TSS	Fetal Heart	heart

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