Variant report

Variant	rs34209805
Chromosome Location	chr18:8891541-8891542
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:8889720..8892618-chr18:8911073..8912769,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12954558	1.00[EUR][1000 genomes]
rs12955548	1.00[EUR][1000 genomes]
rs12956691	1.00[EUR][1000 genomes]
rs12962881	1.00[EUR][1000 genomes]
rs12968320	1.00[EUR][1000 genomes]
rs12970613	1.00[EUR][1000 genomes]
rs34753817	1.00[EUR][1000 genomes]
rs35549057	0.93[EUR][1000 genomes]
rs36051372	1.00[EUR][1000 genomes]
rs71362047	1.00[EUR][1000 genomes]
rs7237559	1.00[EUR][1000 genomes]
rs7505842	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv833584	chr18:8728616-8904213	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8889400-8891600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr18:8889400-8891800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr18:8889400-8891800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr18:8889400-8892200	Enhancers	Osteobl	bone
5	chr18:8889400-8892400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr18:8889400-8892600	Enhancers	NHDF-Ad	bronchial
7	chr18:8889600-8891800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr18:8889600-8891800	Enhancers	HMEC	breast
9	chr18:8889600-8891800	Enhancers	NHEK	skin
10	chr18:8889800-8891600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr18:8889800-8891600	Enhancers	Placenta	Placenta
12	chr18:8889800-8891800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr18:8889800-8891800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr18:8889800-8892000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr18:8889800-8892000	Enhancers	HUVEC	blood vessel
16	chr18:8890000-8891600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr18:8890600-8891600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr18:8890600-8891600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr18:8890600-8891600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr18:8890600-8891600	Enhancers	Fetal Intestine Large	intestine
21	chr18:8890600-8891600	Enhancers	Stomach Smooth Muscle	stomach
22	chr18:8890600-8891800	Enhancers	Fetal Intestine Small	intestine
23	chr18:8890800-8891600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr18:8890800-8891600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr18:8890800-8891600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr18:8890800-8891600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr18:8890800-8891600	Flanking Active TSS	K562	blood
28	chr18:8891000-8891600	Enhancers	Fetal Kidney	kidney
29	chr18:8891000-8891600	Enhancers	Stomach Mucosa	stomach
30	chr18:8891000-8891800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr18:8891000-8891800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr18:8891200-8891600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr18:8891200-8891600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr18:8891200-8891600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr18:8891200-8891600	Enhancers	Placenta Amnion	Placenta Amnion
36	chr18:8891200-8891600	Bivalent Enhancer	Small Intestine	intestine
37	chr18:8891200-8891600	Flanking Active TSS	NH-A	brain
38	chr18:8891200-8891800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr18:8891200-8891800	Enhancers	Pancreas	Pancrea
40	chr18:8891200-8891800	Enhancers	HSMM	muscle
41	chr18:8891200-8891800	Enhancers	HSMMtube	muscle
42	chr18:8891200-8892600	Enhancers	NHLF	lung
43	chr18:8891400-8891600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr18:8891400-8891800	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr18:8891400-8891800	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr18:8891400-8891800	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr18:8891400-8891800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr18:8891400-8891800	Flanking Active TSS	A549	lung
49	chr18:8891400-8892000	Enhancers	Hela-S3	cervix
50	chr18:8891400-8893400	Weak transcription	Colon Smooth Muscle	Colon

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