Variant report

Variant	rs7237559
Chromosome Location	chr18:8913519-8913520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11873544	1.00[ASN][1000 genomes]
rs12954558	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12955548	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12956691	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12962881	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12968320	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12970613	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34209805	1.00[EUR][1000 genomes]
rs34446906	1.00[ASN][1000 genomes]
rs34753817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35549057	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36051372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71362047	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8910400-8914200	Enhancers	Primary B cells from peripheral blood	blood
2	chr18:8910800-8913600	Enhancers	GM12878-XiMat	blood
3	chr18:8911000-8913600	Enhancers	Fetal Muscle Leg	muscle
4	chr18:8911000-8914600	Enhancers	Primary B cells from cord blood	blood
5	chr18:8912000-8914000	Enhancers	Fetal Brain Male	brain
6	chr18:8912200-8913600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr18:8912200-8913600	Flanking Active TSS	K562	blood
8	chr18:8912600-8913600	Enhancers	Fetal Brain Female	brain
9	chr18:8912600-8913600	Enhancers	Fetal Stomach	stomach
10	chr18:8913000-8914000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr18:8913200-8914400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr18:8913400-8918600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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