Variant report

Variant	rs34753817
Chromosome Location	chr18:8912685-8912686
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:8889720..8892618-chr18:8911073..8912769,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11873544	1.00[ASN][1000 genomes]
rs12954558	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12955548	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12956691	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12962881	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12968320	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12970613	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34209805	1.00[EUR][1000 genomes]
rs34446906	1.00[ASN][1000 genomes]
rs35549057	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36051372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71362047	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7237559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8910400-8914200	Enhancers	Primary B cells from peripheral blood	blood
2	chr18:8910800-8913200	Enhancers	NHDF-Ad	bronchial
3	chr18:8910800-8913600	Enhancers	GM12878-XiMat	blood
4	chr18:8911000-8913600	Enhancers	Fetal Muscle Leg	muscle
5	chr18:8911000-8914600	Enhancers	Primary B cells from cord blood	blood
6	chr18:8911600-8913000	Enhancers	Fetal Muscle Trunk	muscle
7	chr18:8912000-8913000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr18:8912000-8913400	Enhancers	Fetal Kidney	kidney
9	chr18:8912000-8914000	Enhancers	Fetal Brain Male	brain
10	chr18:8912200-8912800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr18:8912200-8912800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr18:8912200-8913000	Enhancers	Fetal Intestine Small	intestine
13	chr18:8912200-8913000	Enhancers	Hela-S3	cervix
14	chr18:8912200-8913000	Enhancers	NHEK	skin
15	chr18:8912200-8913200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr18:8912200-8913200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr18:8912200-8913600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr18:8912200-8913600	Flanking Active TSS	K562	blood
19	chr18:8912400-8912800	Enhancers	H1 Cell Line	embryonic stem cell
20	chr18:8912400-8912800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr18:8912400-8912800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr18:8912400-8912800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr18:8912400-8912800	Enhancers	Esophagus	oesophagus
24	chr18:8912400-8912800	Enhancers	Fetal Intestine Large	intestine
25	chr18:8912400-8912800	Enhancers	HSMM	muscle
26	chr18:8912400-8913000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr18:8912400-8913000	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr18:8912400-8913000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr18:8912400-8913000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr18:8912400-8913000	Enhancers	Placenta	Placenta
31	chr18:8912400-8913000	Enhancers	Placenta Amnion	Placenta Amnion
32	chr18:8912400-8913200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr18:8912400-8913200	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr18:8912400-8913200	Enhancers	Brain Germinal Matrix	brain
35	chr18:8912400-8913400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr18:8912400-8913400	Enhancers	HSMMtube	muscle
37	chr18:8912600-8912800	Enhancers	Stomach Smooth Muscle	stomach
38	chr18:8912600-8913000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr18:8912600-8913200	Enhancers	Osteobl	bone
40	chr18:8912600-8913400	Enhancers	Colon Smooth Muscle	Colon
41	chr18:8912600-8913600	Enhancers	Fetal Brain Female	brain
42	chr18:8912600-8913600	Enhancers	Fetal Stomach	stomach

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