Variant report

Variant	rs34228457
Chromosome Location	chr5:35472481-35472482
allele	AA/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10053766	0.88[ASN][1000 genomes]
rs10071128	0.88[ASN][1000 genomes]
rs10079365	0.88[ASN][1000 genomes]
rs10213837	0.85[ASN][1000 genomes]
rs2397845	0.85[ASN][1000 genomes]
rs2397846	0.85[ASN][1000 genomes]
rs984638	0.85[ASN][1000 genomes]
rs987803	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018541	chr5:35446209-35491185	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030395	chr5:35446516-35491185	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35469200-35479400	Weak transcription	Pancreas	Pancrea
2	chr5:35471000-35475000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:35471200-35473200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:35471200-35475800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:35471600-35476400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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