Variant report

Variant	rs984638
Chromosome Location	chr5:35485043-35485044
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35478172..35480721-chr5:35482936..35485324,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10053766	0.96[ASN][1000 genomes]
rs10071128	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10079365	0.96[ASN][1000 genomes]
rs10213837	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10472966	0.81[AFR][1000 genomes]
rs2397845	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2397846	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34228457	0.85[ASN][1000 genomes]
rs764912	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs987803	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018541	chr5:35446209-35491185	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030395	chr5:35446516-35491185	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35479800-35488600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:35481600-35485200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:35482000-35485200	Enhancers	Fetal Kidney	kidney
4	chr5:35482400-35485200	Enhancers	Fetal Intestine Large	intestine
5	chr5:35482400-35486200	Enhancers	Liver	Liver
6	chr5:35482600-35486200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:35482800-35485600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:35482800-35486800	Weak transcription	Esophagus	oesophagus
9	chr5:35483000-35486800	Weak transcription	Ovary	ovary
10	chr5:35484000-35487200	Weak transcription	Fetal Stomach	stomach
11	chr5:35484200-35485600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr5:35484400-35485600	Enhancers	Fetal Intestine Small	intestine
13	chr5:35484600-35486000	Weak transcription	Fetal Lung	lung
14	chr5:35484800-35486000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr5:35484800-35486600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr5:35484800-35488400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:35484800-35488400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:35484800-35488600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr5:35485000-35486000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr5:35485000-35486400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr5:35485000-35486600	Enhancers	HepG2	liver
22	chr5:35485000-35487600	Weak transcription	Colon Smooth Muscle	Colon
23	chr5:35485000-35488200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr5:35485000-35488400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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