Variant report

Variant	rs764912
Chromosome Location	chr5:35476734-35476735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10213837	0.82[EUR][1000 genomes]
rs10472966	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1396386	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16902178	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252095	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252130	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252290	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17318782	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2397844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57874690	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73747466	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018541	chr5:35446209-35491185	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030395	chr5:35446516-35491185	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs764912	SLC47A2	trans	brain	seeQTL
rs764912	CCDC37	trans	brain	seeQTL
rs764912	CAPS	trans	brain	seeQTL
rs764912	CAPSL	cis	brain	seeQTL
rs764912	TEKT1	trans	brain	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35469200-35479400	Weak transcription	Pancreas	Pancrea
2	chr5:35474000-35478000	Weak transcription	NHDF-Ad	bronchial
3	chr5:35475400-35480400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:35475800-35477000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr5:35475800-35477200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr5:35475800-35478000	Enhancers	Fetal Kidney	kidney
7	chr5:35476200-35477200	Enhancers	Colon Smooth Muscle	Colon
8	chr5:35476200-35479000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:35476400-35477200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr5:35476400-35477200	Enhancers	Ovary	ovary
11	chr5:35476400-35479000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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