Variant report

Variant	rs2397844
Chromosome Location	chr5:35481572-35481573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10213837	0.85[EUR][1000 genomes]
rs10472966	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1396386	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16902178	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252095	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252130	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252290	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17318782	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs176269	0.81[EUR][1000 genomes]
rs57874690	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73747466	0.95[ASN][1000 genomes]
rs764912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018541	chr5:35446209-35491185	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030395	chr5:35446516-35491185	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35478400-35482400	Weak transcription	Ovary	ovary
2	chr5:35479600-35482000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr5:35479600-35482000	Weak transcription	Fetal Kidney	kidney
4	chr5:35479600-35482400	Weak transcription	Fetal Lung	lung
5	chr5:35479600-35483000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:35479800-35482200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:35479800-35482400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:35479800-35482800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:35479800-35483000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:35479800-35488600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:35480000-35482400	Weak transcription	Fetal Intestine Large	intestine
12	chr5:35480200-35482400	Weak transcription	Fetal Intestine Small	intestine
13	chr5:35480200-35483800	Weak transcription	Colon Smooth Muscle	Colon
14	chr5:35480400-35481600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr5:35480400-35481600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr5:35480400-35482400	Weak transcription	Liver	Liver
17	chr5:35480400-35483200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:35480800-35481600	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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