Variant report

Variant	rs17252095
Chromosome Location	chr5:35466081-35466082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10053766	0.84[EUR][1000 genomes]
rs10079365	0.84[EUR][1000 genomes]
rs10472966	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1396386	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16902178	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252130	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252290	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17318782	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2397844	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57874690	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73747466	0.95[ASN][1000 genomes]
rs764912	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018541	chr5:35446209-35491185	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030395	chr5:35446516-35491185	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs17252095	ZMYND10	trans	brain	seeQTL
rs17252095	SLC47A2	trans	brain	seeQTL
rs17252095	CCDC11	trans	brain	seeQTL
rs17252095	CCDC37	trans	brain	seeQTL
rs17252095	TMEM140	trans	brain	seeQTL
rs17252095	CAPSL	trans	brain	seeQTL
rs17252095	KANK4	trans	brain	seeQTL
rs17252095	BOK	trans	brain	seeQTL
rs17252095	TMEM189	trans	brain	seeQTL
rs17252095	CAPSL	cis	brain	seeQTL
rs17252095	CAPS	trans	brain	seeQTL
rs17252095	TEKT1	trans	brain	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35464400-35468000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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