Variant report

Variant	rs1396386
Chromosome Location	chr5:35473345-35473346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10053766	0.82[EUR][1000 genomes]
rs10079365	0.82[EUR][1000 genomes]
rs10472966	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16902178	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252095	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17318782	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2397844	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57874690	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73747466	0.95[ASN][1000 genomes]
rs764912	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018541	chr5:35446209-35491185	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030395	chr5:35446516-35491185	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35469200-35479400	Weak transcription	Pancreas	Pancrea
2	chr5:35471000-35475000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:35471200-35475800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr5:35471600-35476400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr5:35473200-35473800	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links